C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ataxin 7-like 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000048997 Atxn7l2 10090 - 3:108202222-108210934 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000102633 Atxn7l2-001 108202222-108210934 protein_coding
  ENSMUST00000117409 Atxn7l2-005 108202222-108210486 protein_coding
  ENSMUST00000117784 Atxn7l2-004 108202228-108210462 protein_coding
  ENSMUST00000119650 Atxn7l2-006 108202240-108210466 protein_coding
  ENSMUST00000127157 Atxn7l2-003 108207082-108209571 protein_coding
  ENSMUST00000141054 Atxn7l2-002 108202228-108208574 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102633ENSMUST00000117409ENSMUST00000117784ENSMUST00000119650ENSMUST00000127157ENSMUST00000141054
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102633 N/A N/A N/A N/A N/A 0.385±0.00 N/A 1.694±0.35 0.216±0.01 N/A 0.607±0.07 0.820±0.01 0.484±0.12 0.717±0.26
ENSMUST00000117409 0.813±0.00 1.288±0.53 1.153±0.11 4.785±0.79 1.031±0.23 1.072±0.24 0.353±0.00 2.941±1.12 0.390±0.11 1.622±0.42 0.738±0.00 1.825±0.67 0.601±0.19 1.739±0.37
ENSMUST00000117784 0.802±0.00 2.417±1.33 1.244±0.33 7.885±1.67 1.532±0.99 1.165±0.38 0.412±0.00 3.806±0.71 0.923±0.21 2.124±0.00 1.628±0.69 3.154±1.09 1.001±0.61 N/A
ENSMUST00000119650 N/A N/A N/A N/A N/A 0.484±0.00 N/A N/A N/A N/A N/A N/A 0.448±0.00 N/A
ENSMUST00000127157 N/A N/A N/A 7.614±0.00 N/A N/A N/A N/A N/A N/A N/A 1.374±0.48 0.226±0.07 0.401±0.00
ENSMUST00000141054 1.541±0.61 1.144±0.16 0.665±0.00 3.969±0.43 0.695±0.40 0.409±0.00 0.305±0.10 N/A 0.235±0.04 0.815±0.26 0.921±0.25 1.095±0.46 0.246±0.12 0.649±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099A CIL_00099A_0002 VISTA 3:108089934-108692442
CIL_00098X CIL_00098X_0002 VISTA 3:108109603-108712500

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055300 atxn7l2a ataxin 7-like 2a protein_coding Danio_rerio
ENSDARG00000056268 atxn7l2b ataxin 7-like 2b protein_coding Danio_rerio
ENSG00000162650 ATXN7L2 ataxin 7-like 2 protein_coding Homo_sapiens

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