C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: thymocyte selection associated
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000049109 Themis 10090 + 10:28668360-28883818 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000056097 Themis-001 28668360-28883815 protein_coding
  ENSMUST00000060409 Themis-004 28668360-28789920 protein_coding
  ENSMUST00000105516 Themis-005 28668397-28797816 protein_coding
  ENSMUST00000159927 Themis-002 28668627-28883818 nonsense_mediated_decay
  ENSMUST00000161345 Themis-007 28668633-28782046 protein_coding
  ENSMUST00000162202 Themis-006 28668633-28739306 nonsense_mediated_decay
  ENSMUST00000162343 Themis-003 28668395-28764039 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056097ENSMUST00000060409ENSMUST00000105516ENSMUST00000159927ENSMUST00000161345ENSMUST00000162202ENSMUST00000162343
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056097 N/A N/A 0.023±0.00 N/A 0.596±0.26 N/A 0.015±0.00 0.065±0.00 0.044±0.00 0.027±0.00 0.147±0.00 0.040±0.03 0.019±0.00 0.023±0.00
ENSMUST00000060409 0.018±0.00 N/A N/A N/A N/A N/A 0.024±0.01 0.028±0.02 0.011±0.01 0.092±0.00 N/A N/A 0.016±0.00 0.114±0.00
ENSMUST00000105516 0.007±0.00 N/A N/A N/A 0.526±0.20 N/A N/A 0.009±0.00 N/A 0.063±0.00 N/A N/A 0.053±0.00 N/A
ENSMUST00000159927 0.025±0.02 N/A N/A 0.004±0.00 0.248±0.00 0.031±0.00 0.019±0.01 0.043±0.03 0.014±0.02 0.060±0.02 N/A 0.044±0.00 0.013±0.01 N/A
ENSMUST00000161345 N/A N/A 0.144±0.00 N/A N/A N/A N/A 0.098±0.00 N/A N/A N/A 0.253±0.00 N/A N/A
ENSMUST00000162202 N/A N/A N/A N/A N/A N/A N/A 0.074±0.00 N/A N/A N/A 0.017±0.00 0.065±0.00 N/A
ENSMUST00000162343 N/A 0.093±0.01 N/A N/A N/A 0.067±0.00 N/A 0.058±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005911 IDA cell-cell junction
GO:0008180 IDA COP9 signalosome
GO:0043368 IMP positive T cell selection
GO:0043383 IMP negative T cell selection
GO:0050852 IMP T cell receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010619 themis thymocyte selection associated protein_coding Danio_rerio
ENSG00000172673 THEMIS thymocyte selection associated protein_coding Homo_sapiens

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