C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AF4/FMR2 family, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000060945 Aff4-001 ENSMUSG00000049470 10090 + 11:53350833-53421830 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060945
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060945 12.895±5.00 10.594±1.24 9.930±3.98 12.130±6.35 10.466±2.00 7.127±3.12 5.092±1.10 7.572±1.85 2.834±0.74 13.384±1.56 3.434±1.42 14.061±6.21 13.588±6.10 5.851±2.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002BQ CIL_0002BQ_0002 CGP 11:53324679-53421830

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0005739 IEA mitochondrion
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007286 IMP spermatid development
GO:0008023 ISS transcription elongation factor complex
GO:0035327 IDA transcriptionally active chromatin

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000042840 aff4-201 protein_coding Danio_rerio 8e-38 165
ENSDART00000151748 aff4-001 protein_coding Danio_rerio 8e-38 165
ENSDART00000126998 aff4-202 protein_coding Danio_rerio 3e-37 163
ENSDART00000151350 aff4-003 processed_transcript Danio_rerio 1e-26 128
ENST00000265343 AFF4-001 protein_coding Homo_sapiens 0 5123
ENST00000378593 AFF4-006 processed_transcript Homo_sapiens 0 575
ENST00000378595 AFF4-004 protein_coding Homo_sapiens 0 3373
ENST00000421773 AFF4-009 protein_coding Homo_sapiens 0 573
ENST00000425658 AFF4-005 protein_coding Homo_sapiens 0 512
ENST00000465484 AFF4-003 retained_intron Homo_sapiens 0 1506
ENST00000477369 AFF4-007 retained_intron Homo_sapiens 0 558
ENST00000478588 AFF4-008 processed_transcript Homo_sapiens 0 881
ENST00000491831 AFF4-002 processed_transcript Homo_sapiens 0 1544

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