C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038104 Bdp1-001 ENSMUSG00000049658 10090 - 13:100017994-100104070 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038104
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038104 0.612±0.27 0.431±0.20 0.427±0.06 0.850±0.21 0.540±0.29 0.468±0.23 0.424±0.15 0.410±0.16 0.815±0.63 0.997±0.40 0.549±0.15 0.655±0.17 1.669±1.10 0.447±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002KO CIL_0002KO_0002 CGP 13:99948533-100104070

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005634 ISO nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 ISA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358731 BDP1-016 protein_coding Homo_sapiens 0 1755
ENST00000380675 BDP1-201 protein_coding Homo_sapiens 0 1753
ENST00000508917 BDP1-018 retained_intron Homo_sapiens 0 1733
ENST00000514903 BDP1-020 nonsense_mediated_decay Homo_sapiens 0 318
ENST00000525844 BDP1-019 nonsense_mediated_decay Homo_sapiens 0 318
ENST00000611966 AC245931.1-202 protein_coding Homo_sapiens 0 1738
ENST00000612125 BDP1-020 nonsense_mediated_decay Homo_sapiens 0 318
ENST00000613844 AC245931.1-201 protein_coding Homo_sapiens 0 1759
ENST00000614425 BDP1-019 nonsense_mediated_decay Homo_sapiens 0 318
ENST00000616093 BDP1-202 protein_coding Homo_sapiens 0 1753
ENST00000617085 BDP1-016 protein_coding Homo_sapiens 0 1755
ENST00000617176 BDP1-018 retained_intron Homo_sapiens 0 1733

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