C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger SCAN domains 29
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110661 Zscan29-001 ENSMUSG00000050619 10090 - 2:121158273-121170268 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastHeartKidneyLiverLungMuscleOvaryENSMUST00000110661
Transcript ID Bladder Breast Heart Kidney Liver Lung Muscle Ovary
ENSMUST00000110661 3.997±0.00 4.753±1.18 1.636±0.00 3.387±0.57 2.125±0.00 3.299±0.00 1.414±0.27 7.190±0.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YG CIL_0005YG_0002 CGP 2:121140428-121171125
CIL_0005YH CIL_0005YH_0002 CGP 2:121158273-121198770

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003676 IEA nucleic acid binding
GO:0005634 IBA nucleus
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000219478 ZNF500-001 protein_coding Homo_sapiens 8e-31 141
ENST00000328086 ZKSCAN2-001 protein_coding Homo_sapiens 2e-23 117
ENST00000396972 ZSCAN29-201 protein_coding Homo_sapiens 0 1351
ENST00000396976 ZSCAN29-001 protein_coding Homo_sapiens 0 2667
ENST00000545009 ZNF500-008 protein_coding Homo_sapiens 3e-31 141
ENST00000562072 ZSCAN29-003 protein_coding Homo_sapiens 0 1600
ENST00000566849 ZSCAN29-002 nonsense_mediated_decay Homo_sapiens 0 1351
ENST00000568898 ZSCAN29-005 protein_coding Homo_sapiens 0 894
ENST00000569150 ZKSCAN2-002 nonsense_mediated_decay Homo_sapiens 8e-24 117
ENST00000570181 ZSCAN29-004 protein_coding Homo_sapiens 0 985
ENST00000588602 ZNF500-004 protein_coding Homo_sapiens 7e-32 141
ENST00000589422 ZNF500-002 nonsense_mediated_decay Homo_sapiens 2e-31 141

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