C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: V-set and transmembrane domain containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000050666 Vstm4 10090 + 14:32856756-32939487 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000053175 Vstm4-001 32856756-32939487 protein_coding
  ENSMUST00000100721 Vstm4-002 32856789-32939487 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053175ENSMUST00000100721
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053175 6.181±0.83 7.707±0.72 7.757±0.59 1.167±0.67 2.160±0.36 2.015±0.18 3.877±0.33 4.439±0.44 1.335±0.95 7.595±2.66 0.487±0.12 6.940±2.82 12.309±4.77 2.539±1.05
ENSMUST00000100721 N/A N/A 1.246±0.00 0.326±0.03 0.654±0.00 N/A N/A N/A 0.150±0.00 N/A 0.237±0.12 4.492±1.74 10.326±3.35 0.222±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084A CIL_00084A_0002 VISTA 14:32298253-32899721
CIL_0008ZL CIL_0008ZL_0002 VISTA 14:32470674-33071522
CIL_0007OS CIL_0007OS_0003 UCNEbase 14:32546905-33068248
CIL_0006H6 CIL_0006H6_0002 CGP 14:32856756-33185508

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010154 vstm4a V-set and transmembrane domain containing 4a protein_coding Danio_rerio
ENSDARG00000053186 vstm4b V-set and transmembrane domain containing 4b protein_coding Danio_rerio
ENSG00000165633 VSTM4 V-set and transmembrane domain containing 4 protein_coding Homo_sapiens

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