C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006H6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000010154-ENSDARG00000077009 CGP 7955 13:31174757-31292318
GeneTranscriptPositionBiotype
ENSDARG00000010154 (vstm4a)
V-set and transmembrane domain containing 4a 		ENSDART00000057469 (vstm4a-001) 31174757-31191386 protein_coding
ENSDART00000114007 (vstm4a-002) 31174869-31178640 retained_intron
ENSDARG00000077009 (wdfy4)
WDFY family member 4 		ENSDART00000112653 (wdfy4-201) 31204563-31292318 protein_coding
ENSDART00000137709 (wdfy4-001) 31248313-31249107 protein_coding
ENSDART00000139394 (wdfy4-003) 31208649-31231877 protein_coding
ENSDART00000145287 (wdfy4-002) 31239149-31241562 protein_coding

Danio rerio Ensembl (Zv9)

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Structures from Ensembl
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CIL_0006H6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000050666-ENSMUSG00000051506 CGP 10090 14:32856756-33185508
GeneTranscriptPositionBiotype
ENSMUSG00000041673 (Lrrc18)
leucine rich repeat containing 18 		ENSMUST00000038956 (Lrrc18-001) 32991382-33015292 protein_coding
ENSMUST00000120588 (Lrrc18-005) 32991403-33008678 protein_coding
ENSMUST00000120866 (Lrrc18-002) 32991398-33009396 protein_coding
ENSMUST00000120951 (Lrrc18-006) 32991458-33014155 protein_coding
ENSMUST00000123822 (Lrrc18-004) 32991446-33008839 protein_coding
ENSMUST00000123910 (Lrrc18-003) 32995265-33008459 processed_transcript
ENSMUSG00000050666 (Vstm4)
V-set and transmembrane domain containing 4 		ENSMUST00000053175 (Vstm4-001) 32856756-32939487 protein_coding
ENSMUST00000100721 (Vstm4-002) 32856789-32939487 protein_coding
ENSMUSG00000051506 (Wdfy4)
WD repeat and FYVE domain containing 4 		ENSMUST00000061753 (Wdfy4-201) 32959547-33185066 protein_coding
ENSMUST00000130509 (Wdfy4-001) 32959570-33185066 protein_coding
ENSMUST00000132153 (Wdfy4-002) 33018284-33023337 protein_coding
ENSMUST00000159606 (Wdfy4-003) 33162749-33185508 protein_coding
ENSMUSG00000098236 (Gm7734)
predicted gene 7734 		ENSMUST00000182832 (Gm7734-001) 32897719-32898729 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006H6_0001ENSDARG00000010154ENSDART00000057469ENSDART00000114007ENSDARG00000077009ENSDART00000112653ENSDART00000137709ENSDART00000139394ENSDART00000145287CIL_0006H6_0002ENSMUSG00000041673ENSMUST00000038956ENSMUST00000120588ENSMUST00000120866ENSMUST00000120951ENSMUST00000123822ENSMUST00000123910ENSMUSG00000050666ENSMUST00000053175ENSMUST00000100721ENSMUSG00000051506ENSMUST00000061753ENSMUST00000130509ENSMUST00000132153ENSMUST00000159606ENSMUSG00000098236ENSMUST00000182832
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006H6_0001ENSDARG00000010154ENSDART00000057469ENSDARG00000077009ENSDART00000112653ENSDART00000139394CIL_0006H6_0002ENSMUSG00000041673ENSMUST00000038956ENSMUST00000120866ENSMUST00000120951ENSMUST00000123822ENSMUSG00000050666ENSMUST00000053175ENSMUST00000100721ENSMUSG00000051506ENSMUST00000061753ENSMUST00000130509ENSMUSG00000098236ENSMUST00000182832
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000010154 ENSDART00000057469 N/A N/A N/A 1.645±1.20 N/A N/A 2.780±1.82 0.343±0.20 0.031±0.00 N/A 0.301±0.00 N/A N/A N/A
ENSDART00000114007 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000077009 ENSDART00000112653 N/A N/A N/A 0.213±0.19 N/A N/A 0.950±0.11 1.362±1.30 0.250±0.00 N/A 0.269±0.00 N/A N/A N/A
ENSDART00000137709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000139394 N/A N/A N/A 0.405±0.00 N/A N/A 0.794±0.00 N/A 0.167±0.00 N/A 0.271±0.00 N/A N/A N/A
ENSDART00000145287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000041673 ENSMUST00000038956 0.069±0.00 0.051±0.00 0.040±0.00 0.052±0.00 0.149±0.05 0.102±0.04 0.040±0.01 0.089±0.03 0.023±0.01 N/A 0.021±0.01 0.465±0.26 0.093±0.06 14.461±0.00
ENSMUST00000120588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000120866 0.678±0.40 0.199±0.05 N/A 0.041±0.00 0.204±0.13 0.198±0.04 0.173±0.07 0.237±0.18 0.053±0.03 0.568±0.26 0.045±0.00 2.118±0.67 0.291±0.10 296.301±72.13
ENSMUST00000120951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.020±0.00 N/A 0.171±0.00 N/A
ENSMUST00000123822 N/A N/A N/A N/A 0.137±0.01 0.230±0.00 N/A 0.203±0.00 0.064±0.04 N/A 0.072±0.00 N/A 0.252±0.00 N/A
ENSMUST00000123910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000050666 ENSMUST00000053175 6.181±0.83 7.707±0.72 7.757±0.59 1.167±0.67 2.160±0.36 2.015±0.18 3.877±0.33 4.439±0.44 1.335±0.95 7.595±2.66 0.487±0.12 6.940±2.82 12.309±4.77 2.539±1.05
ENSMUST00000100721 N/A N/A 1.246±0.00 0.326±0.03 0.654±0.00 N/A N/A N/A 0.150±0.00 N/A 0.237±0.12 4.492±1.74 10.326±3.35 0.222±0.00
ENSMUSG00000051506 ENSMUST00000061753 N/A 0.091±0.00 N/A 0.031±0.00 N/A N/A 0.087±0.00 0.080±0.00 N/A N/A 0.079±0.02 N/A 0.074±0.02 N/A
ENSMUST00000130509 0.282±0.00 0.453±0.37 0.443±0.00 0.117±0.00 0.680±0.00 0.651±0.19 0.315±0.05 0.413±0.19 0.219±0.18 4.474±0.00 0.067±0.02 1.004±0.32 0.109±0.03 0.382±0.02
ENSMUST00000132153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098236 ENSMUST00000182832 0.119±0.04 0.083±0.00 0.027±0.00 0.024±0.00 0.272±0.16 N/A 0.046±0.02 0.044±0.02 0.047±0.04 0.093±0.07 N/A 0.194±0.08 0.051±0.02 0.103±0.00

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