C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lin-28 homolog A (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000176113 Lin28a-002 ENSMUSG00000050966 10090 - 4:134006244-134012386 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastMuscleTestisENSMUST00000176113
Transcript ID Breast Muscle Testis
ENSMUST00000176113 0.139±0.00 0.216±0.04 1.250±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T4 CIL_0007T4_0002 VISTA 4:133429051-134030305

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003729 IDA mRNA binding
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007281 IGI germ cell development
GO:0008270 IEA zinc ion binding
GO:0010586 IDA miRNA metabolic process
GO:0031054 IDA pre-miRNA processing
GO:0031369 IPI translation initiation factor binding
GO:0035198 IDA miRNA binding
GO:0045666 IDA positive regulation of neuron differentiation
GO:0045686 IDA negative regulation of glial cell differentiation
GO:0045727 IDA positive regulation of translation
GO:0060964 IGI regulation of gene silencing by miRNA

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254231 LIN28A-201 protein_coding Homo_sapiens 0 379
ENST00000326279 LIN28A-001 protein_coding Homo_sapiens 0 379
ENST00000429574 LIN28AP1-001 processed_pseudogene Homo_sapiens 0 220
ENST00000603272 RP5-1128N12.2-001 processed_pseudogene Homo_sapiens 0 224

Loading