C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lin-28 homolog A (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000051674 Lin28a-001 ENSMUSG00000050966 10090 - 4:134003330-134018841 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000051674
Transcript ID Adipose Brain Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051674 0.021±0.00 0.082±0.05 0.053±0.01 0.009±0.00 0.295±0.12 0.030±0.01 0.041±0.01 0.171±0.09 6.159±5.25 0.650±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T4 CIL_0007T4_0002 VISTA 4:133429051-134030305

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0003677 IEA DNA binding
GO:0003723 IDA RNA binding
GO:0003729 IDA mRNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007281 IGI germ cell development
GO:0008270 IEA zinc ion binding
GO:0010494 ISS cytoplasmic stress granule
GO:0010586 IDA miRNA metabolic process
GO:0010587 IMP miRNA catabolic process
GO:0019827 IEA stem cell maintenance
GO:0031054 IDA:IMP pre-miRNA processing
GO:0031123 IEA RNA 3'-end processing
GO:0031369 IPI translation initiation factor binding
GO:0035198 IDA miRNA binding
GO:0045666 IDA positive regulation of neuron differentiation
GO:0045686 IDA negative regulation of glial cell differentiation
GO:0045727 IDA positive regulation of translation
GO:0048863 IMP stem cell differentiation
GO:0060964 IGI regulation of gene silencing by miRNA
GO:1901724 IMP positive regulation of cell proliferation involved in kidney development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254231 LIN28A-201 protein_coding Homo_sapiens 0 1026
ENST00000326279 LIN28A-001 protein_coding Homo_sapiens 0 1061
ENST00000429574 LIN28AP1-001 processed_pseudogene Homo_sapiens 0 466
ENST00000603272 RP5-1128N12.2-001 processed_pseudogene Homo_sapiens 0 523

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