C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057500 Rnf7-001 ENSMUSG00000051234 10090 - 9:96470937-96478675 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057500
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057500 24.058±0.68 12.546±1.48 45.346±5.35 49.427±25.82 15.060±3.04 12.623±1.64 26.229±0.62 30.166±6.09 27.901±20.76 23.144±2.62 45.851±9.55 20.978±4.00 36.694±15.23 43.797±18.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008I1 CIL_0008I1_0002 VISTA 9:96080125-96682941

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006919 IDA activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0008270 IEA zinc ion binding
GO:0008631 IDA intrinsic apoptotic signaling pathway in response to oxidative stress
GO:0008637 IDA apoptotic mitochondrial changes
GO:0016567 IEA protein ubiquitination
GO:0019788 ISS NEDD8 ligase activity
GO:0043066 IDA negative regulation of apoptotic process
GO:0045116 ISS protein neddylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000273480 RNF7-001 protein_coding Homo_sapiens 0 542
ENST00000393000 RNF7-002 protein_coding Homo_sapiens 0 494
ENST00000477012 RNF7-003 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000477393 RNF7-004 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000478598 RNF7P1-001 processed_pseudogene Homo_sapiens 0 466
ENST00000480908 RNF7-007 protein_coding Homo_sapiens 0 267
ENST00000498828 RNF7-006 retained_intron Homo_sapiens 0 272

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