C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006RJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000007807-ENSDARG00000077300 CGP 7955 12:18572108-18659764
GeneTranscriptPositionBiotype
ENSDARG00000007807 (cyth3a)
cytohesin 3a 		ENSDART00000020628 (cyth3a-001) 18572108-18630252 protein_coding
ENSDARG00000077300 (usp42)
ubiquitin specific peptidase 42 		ENSDART00000134597 (usp42-001) 18638224-18659764 protein_coding
ENSDARG00000093182 (eif2ak1)
eukaryotic translation initiation factor 2-alpha kinase 1 		ENSDART00000028090 (eif2ak1-201) 18659335-18670507 protein_coding
ENSDART00000134690 (eif2ak1-001) 18659335-18670507 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0006RJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000018001-ENSMUSG00000051306 CGP 10090 5:143622447-143732280
GeneTranscriptPositionBiotype
ENSMUSG00000018001 (Cyth3)
cytohesin 3 		ENSMUST00000110727 (Cyth3-002) 143651241-143708256 protein_coding
ENSMUST00000116456 (Cyth3-001) 143622447-143710250 protein_coding
ENSMUST00000131436 (Cyth3-003) 143634066-143692652 protein_coding
ENSMUST00000177196 (Cyth3-004) 143622534-143686526 protein_coding
ENSMUST00000177281 (Cyth3-005) 143636351-143692554 protein_coding
ENSMUSG00000051306 (Usp42)
ubiquitin specific peptidase 42 		ENSMUST00000053287 (Usp42-001) 143710325-143732280 protein_coding
ENSMUST00000129606 (Usp42-004) 143721653-143722945 retained_intron
ENSMUST00000141225 (Usp42-005) 143713753-143715613 processed_transcript
ENSMUST00000141396 (Usp42-003) 143713768-143717187 retained_intron
ENSMUST00000155408 (Usp42-002) 143716404-143728017 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006RJ_0001ENSDARG00000007807ENSDART00000020628ENSDARG00000077300ENSDART00000134597ENSDARG00000093182ENSDART00000028090ENSDART00000134690CIL_0006RJ_0002ENSMUSG00000018001ENSMUST00000110727ENSMUST00000116456ENSMUST00000131436ENSMUST00000177196ENSMUST00000177281ENSMUSG00000051306ENSMUST00000053287ENSMUST00000129606ENSMUST00000141225ENSMUST00000141396ENSMUST00000155408
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006RJ_0001ENSDARG00000007807ENSDART00000020628ENSDARG00000077300ENSDART00000134597ENSDARG00000093182ENSDART00000028090ENSDART00000134690CIL_0006RJ_0002ENSMUSG00000018001ENSMUST00000110727ENSMUST00000116456ENSMUST00000131436ENSMUST00000177281ENSMUSG00000051306ENSMUST00000053287ENSMUST00000141225ENSMUST00000141396ENSMUST00000155408
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000007807 ENSDART00000020628 N/A N/A N/A 7.050±1.13 N/A N/A 3.949±0.58 0.673±0.48 0.171±0.00 N/A 2.611±0.00 N/A N/A N/A
ENSDARG00000077300 ENSDART00000134597 N/A N/A N/A 3.327±1.60 N/A N/A N/A 2.060±1.57 0.454±0.00 N/A N/A N/A N/A N/A
ENSDARG00000093182 ENSDART00000028090 N/A N/A N/A 1.918±0.00 N/A N/A 0.890±0.97 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000134690 N/A N/A N/A N/A N/A N/A 0.204±0.04 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000018001 ENSMUST00000110727 N/A N/A N/A N/A N/A 3.073±0.00 N/A N/A 0.253±0.00 N/A N/A N/A N/A 4.991±1.93
ENSMUST00000116456 7.412±4.27 64.119±4.68 18.273±0.03 9.211±3.11 10.660±6.35 9.940±3.21 10.381±2.44 4.939±3.06 9.312±9.48 89.497±3.61 2.477±0.78 17.622±9.48 18.712±3.27 3.217±0.54
ENSMUST00000131436 N/A N/A N/A 42.699±0.00 N/A N/A N/A N/A N/A N/A N/A 64.466±0.00 78.128±11.94 N/A
ENSMUST00000177196 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 37.093±0.00 92.964±0.00 54.534±0.00
ENSMUSG00000051306 ENSMUST00000053287 2.215±0.89 1.370±0.48 1.644±0.76 4.583±2.69 1.697±0.61 1.675±0.32 0.751±0.13 1.645±0.14 1.168±0.30 2.256±0.37 1.445±0.09 2.583±1.14 2.716±1.55 7.042±3.51
ENSMUST00000129606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141225 N/A 2.915±0.62 N/A 6.348±0.00 N/A N/A N/A N/A N/A N/A N/A 11.547±0.00 6.753±0.65 78.652±0.00
ENSMUST00000141396 0.818±0.32 2.030±0.36 0.604±0.00 0.896±0.23 0.903±0.17 2.296±0.50 0.257±0.02 0.483±0.06 0.595±0.19 1.516±0.05 N/A 2.778±0.55 N/A N/A
ENSMUST00000155408 N/A N/A N/A N/A 1.015±0.00 N/A 0.334±0.00 N/A N/A N/A N/A N/A N/A N/A

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