C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubulin, gamma complex associated protein 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000051786 Tubgcp6 10090 - 15:89098357-89123087 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041656 Tubgcp6-003 89100410-89122886 protein_coding
  ENSMUST00000109353 Tubgcp6-001 89098357-89123087 protein_coding
  ENSMUST00000163290 Tubgcp6-005 89100410-89102603 nonsense_mediated_decay
  ENSMUST00000164717 Tubgcp6-006 89099098-89101098 retained_intron
  ENSMUST00000166480 Tubgcp6-011 89100717-89102014 nonsense_mediated_decay
  ENSMUST00000166994 Tubgcp6-010 89100434-89101543 retained_intron
  ENSMUST00000168256 Tubgcp6-007 89101012-89102180 retained_intron
  ENSMUST00000169069 Tubgcp6-004 89104216-89107429 nonsense_mediated_decay
  ENSMUST00000169208 Tubgcp6-009 89100693-89101279 retained_intron
  ENSMUST00000170877 Tubgcp6-008 89101476-89102372 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041656ENSMUST00000109353ENSMUST00000164717
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041656 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.537±0.00 N/A
ENSMUST00000109353 3.463±0.66 6.221±0.99 3.023±1.75 2.942±1.29 3.597±0.94 3.708±1.05 1.928±0.08 2.199±0.53 2.229±0.69 3.808±0.42 2.294±0.37 4.597±1.07 2.296±1.28 1.440±0.03
ENSMUST00000164717 7.529±1.34 17.978±0.87 3.933±0.50 8.734±2.53 10.654±1.57 9.657±1.38 3.696±1.05 11.048±0.91 11.535±6.07 7.693±0.57 2.716±0.43 11.215±3.43 3.981±1.15 2.578±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000098 CIL_000098_0002 CGP 15:89075124-89100340
CIL_000097 CIL_000097_0002 CGP 15:89089084-89123087
CIL_000096 CIL_000096_0002 CGP 15:89098357-89128700

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 IEA microtubule cytoskeleton organization
GO:0000922 IEA spindle pole
GO:0005813 IEA centrosome
GO:0005815 IEA microtubule organizing center
GO:0007020 IEA microtubule nucleation
GO:0008017 IEA microtubule binding
GO:0008274 IEA gamma-tubulin ring complex
GO:0016020 IEA membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089546 TUBGCP6 tubulin, gamma complex associated protein 6 protein_coding Danio_rerio
ENSG00000128159 TUBGCP6 tubulin, gamma complex associated protein 6 protein_coding Homo_sapiens

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