C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transient receptor potential cation channel, subfamily M, member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000052387 Trpm3 10090 + 19:22139119-22989884 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037901 Trpm3-201 22448283-22989884 protein_coding
  ENSMUST00000074770 Trpm3-202 22139119-22989882 protein_coding
  ENSMUST00000087576 Trpm3-203 22139119-22989882 protein_coding
  ENSMUST00000099564 Trpm3-204 22692619-22926489 protein_coding
  ENSMUST00000099566 Trpm3-205 22692619-22772372 protein_coding
  ENSMUST00000099569 Trpm3-206 22139119-22989882 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037901ENSMUST00000074770ENSMUST00000087576ENSMUST00000099564ENSMUST00000099566ENSMUST00000099569
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037901 0.050±0.00 0.050±0.02 N/A 0.583±0.00 0.097±0.04 0.086±0.04 N/A N/A 0.008±0.01 0.056±0.00 0.043±0.01 0.199±0.11 0.015±0.00 N/A
ENSMUST00000074770 0.086±0.00 0.045±0.02 0.008±0.00 N/A 0.081±0.02 0.048±0.02 N/A 0.288±0.00 0.009±0.00 N/A 0.065±0.00 0.285±0.01 0.010±0.00 N/A
ENSMUST00000087576 N/A 0.023±0.01 N/A 0.614±0.00 N/A N/A 0.175±0.00 0.317±0.01 0.003±0.00 N/A 0.027±0.00 0.084±0.00 0.002±0.00 N/A
ENSMUST00000099564 N/A N/A 0.015±0.00 N/A 0.104±0.09 0.055±0.02 0.063±0.00 N/A 0.009±0.00 N/A 0.022±0.00 0.348±0.00 0.040±0.00 N/A
ENSMUST00000099566 N/A N/A N/A 1.508±0.00 N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A 0.013±0.00 0.234±0.00
ENSMUST00000099569 N/A 0.015±0.00 N/A 0.536±0.00 0.070±0.00 N/A N/A 0.134±0.00 0.003±0.00 N/A 0.032±0.00 0.230±0.12 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000J9 CIL_0000J9_0002 CGP 19:21778342-22989884
CIL_0005JD CIL_0005JD_0002 CGP 19:22139119-23166911

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005227 IEA calcium activated cation channel activity
GO:0005261 ISA cation channel activity
GO:0006812 ISA cation transport
GO:0016021 IEA integral component of membrane
GO:0016048 IEA detection of temperature stimulus
GO:0050951 IEA sensory perception of temperature stimulus
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039181 trpm3 transient receptor potential cation channel, subfamily M, member 3 protein_coding Danio_rerio
ENSG00000083067 TRPM3 transient receptor potential cation channel, subfamily M, member 3 protein_coding Homo_sapiens

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