C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily M, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037901 Trpm3-201 ENSMUSG00000052387 10090 + 19:22448283-22989884 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverLungMuscleOvaryPlacentaENSMUST00000037901
Transcript ID Adipose Adrenal Brain Breast Colon Liver Lung Muscle Ovary Placenta
ENSMUST00000037901 0.050±0.00 0.050±0.02 0.583±0.00 0.097±0.04 0.086±0.04 0.008±0.01 0.056±0.00 0.043±0.01 0.199±0.11 0.015±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000J9 CIL_0000J9_0002 CGP 19:21778342-22989884
CIL_0005JD CIL_0005JD_0002 CGP 19:22139119-23166911

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005227 IEA calcium activated cation channel activity
GO:0005261 ISA cation channel activity
GO:0006812 ISA cation transport
GO:0016021 IEA integral component of membrane
GO:0016048 IEA detection of temperature stimulus
GO:0050951 IEA sensory perception of temperature stimulus
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000052584 trpm1a-201 protein_coding Danio_rerio 0 366
ENSDART00000147919 trpm1a-003 protein_coding Danio_rerio 0 350
ENST00000354500 TRPM3-001 retained_intron Homo_sapiens 0 1136
ENST00000357533 TRPM3-014 protein_coding Homo_sapiens 0 2885
ENST00000358082 TRPM3-015 protein_coding Homo_sapiens 0 2885
ENST00000360823 TRPM3-201 protein_coding Homo_sapiens 0 2885
ENST00000361823 TRPM3-005 protein_coding Homo_sapiens 0 1387
ENST00000377097 TRPM3-006 protein_coding Homo_sapiens 0 665
ENST00000377101 TRPM3-010 protein_coding Homo_sapiens 0 1572
ENST00000377105 TRPM3-202 protein_coding Homo_sapiens 0 5336
ENST00000377110 TRPM3-008 protein_coding Homo_sapiens 0 3155
ENST00000377111 TRPM3-007 protein_coding Homo_sapiens 0 3559
ENST00000396280 TRPM3-012 protein_coding Homo_sapiens 0 2885
ENST00000396283 TRPM3-002 protein_coding Homo_sapiens 0 1140
ENST00000396285 TRPM3-009 protein_coding Homo_sapiens 0 2163
ENST00000396292 TRPM3-011 protein_coding Homo_sapiens 0 3155
ENST00000408909 TRPM3-016 protein_coding Homo_sapiens 0 4905
ENST00000437699 TRPM3-004 processed_transcript Homo_sapiens 0 414

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