C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 188
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000064447 Nup188-001 ENSMUSG00000052533 10090 + 2:30286397-30344266 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064447
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064447 16.690±1.49 15.354±1.49 8.762±0.77 11.244±6.01 14.435±2.42 11.055±0.97 6.625±1.86 8.279±2.24 11.210±5.13 11.552±1.00 2.412±0.17 19.910±5.72 11.567±3.77 44.750±15.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LW CIL_0002LW_0003 CGP 2:30284231-30344266
CIL_0006OJ CIL_0006OJ_0002 CGP 2:30286397-30359337

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005643 IEA nuclear pore
GO:0015031 IEA protein transport
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372577 NUP188-001 protein_coding Homo_sapiens 0 5358
ENST00000467044 NUP188-011 processed_transcript Homo_sapiens 0 593
ENST00000477069 NUP188-002 retained_intron Homo_sapiens 0 2780
ENST00000482796 RP11-101E3.5-001 protein_coding Homo_sapiens 0 372
ENST00000487952 NUP188-012 retained_intron Homo_sapiens 0 440
ENST00000491502 NUP188-005 processed_transcript Homo_sapiens 0 490
ENST00000491990 NUP188-013 processed_transcript Homo_sapiens 0 492
ENST00000495726 NUP188-003 retained_intron Homo_sapiens 0 344
ENST00000550219 NUP188-010 processed_transcript Homo_sapiens 0 355

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