C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 22
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065438 Cdh22-001 ENSMUSG00000053166 10090 - 2:165111507-165234853 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065438
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065438 0.037±0.01 1.115±0.59 0.449±0.03 11.212±6.94 0.257±0.07 0.065±0.02 0.186±0.08 0.048±0.04 0.016±0.01 0.767±0.28 0.188±0.16 0.973±0.20 0.067±0.02 0.060±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BF CIL_0007BF_0002 CGP 2:165111507-165287869

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007420 IEA brain development
GO:0016021 IEA integral component of membrane
GO:0016339 IEA calcium-dependent cell-cell adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372262 CDH22-001 protein_coding Homo_sapiens 0 2484
ENST00000474438 CDH22-002 processed_transcript Homo_sapiens 0 778
ENST00000537909 CDH22-201 protein_coding Homo_sapiens 0 2484

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