C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: keratin 42
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000053654 Krt42 10090 - 11:100262882-100269871 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000017270 Krt42-001 100262887-100269871 protein_coding
  ENSMUST00000107406 Krt42-002 100262882-100265978 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonLiverLungOvaryPlacentaTestisENSMUST00000017270ENSMUST00000107406
Transcript ID Adrenal Bladder Brain Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000017270 N/A 0.005±0.00 0.092±0.00 0.063±0.00 N/A N/A N/A 0.062±0.00 0.830±0.96 0.128±0.09
ENSMUST00000107406 0.050±0.01 N/A 0.031±0.01 0.059±0.02 0.076±0.05 0.009±0.00 0.033±0.00 0.051±0.00 1.079±1.22 0.145±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_000X CGP 11:100256217-100269871
CIL_0000TT CIL_0000TT_0003 CGP 11:100262882-100322096

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005737 IEA cytoplasm
GO:0005882 IEA intermediate filament
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000212 zgc:92061 zgc:92061 protein_coding Danio_rerio
ENSDARG00000014356 zgc:92035 zgc:92035 protein_coding Danio_rerio
ENSDARG00000022334 BX469912.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000023082 krt1-19d keratin, type 1, gene 19d protein_coding Danio_rerio
ENSDARG00000036832 cyt1l type I cytokeratin, enveloping layer, like protein_coding Danio_rerio
ENSDARG00000036834 zgc:109868 zgc:109868 protein_coding Danio_rerio
ENSDARG00000036840 krt15 keratin 15 protein_coding Danio_rerio
ENSDARG00000044975 zgc:153629 zgc:153629 protein_coding Danio_rerio
ENSDARG00000044976 zgc:136902 zgc:136902 protein_coding Danio_rerio
ENSDARG00000090268 si:dkeyp-113d7.4 si:dkeyp-113d7.4 protein_coding Danio_rerio
ENSDARG00000092947 cyt1 type I cytokeratin, enveloping layer protein_coding Danio_rerio
ENSDARG00000094041 krt17 keratin 17 protein_coding Danio_rerio
ENSDARG00000095147 wu:fb17f05 wu:fb17f05 protein_coding Danio_rerio

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