C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 42
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107406 Krt42-002 ENSMUSG00000053654 10090 - 11:100262882-100265978 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLiverLungOvaryPlacentaTestisENSMUST00000107406
Transcript ID Adrenal Brain Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000107406 0.050±0.01 0.031±0.01 0.059±0.02 0.076±0.05 0.009±0.00 0.033±0.00 0.051±0.00 1.079±1.22 0.145±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_000X CGP 11:100256217-100269871
CIL_0000TT CIL_0000TT_0003 CGP 11:100262882-100322096

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000167586 KRT14-001 protein_coding Homo_sapiens 0 518
ENST00000254043 KRT15-001 protein_coding Homo_sapiens 0 298
ENST00000300992 KRT17P2-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 420
ENST00000301653 KRT16-001 protein_coding Homo_sapiens 0 381
ENST00000311208 KRT17-001 protein_coding Homo_sapiens 0 459
ENST00000326333 KRT17P2-002 processed_transcript Homo_sapiens 0 337
ENST00000393974 KRT15-004 protein_coding Homo_sapiens 0 298
ENST00000393976 KRT15-007 protein_coding Homo_sapiens 0 298
ENST00000398469 KRT42P-002 processed_transcript Homo_sapiens 0 309
ENST00000399124 KRT16P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 285
ENST00000399211 KRT17P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 418
ENST00000414673 KRT16P2-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 285
ENST00000417510 KRT16P6-002 processed_transcript Homo_sapiens 0 287
ENST00000420566 KRT17P3-001 unprocessed_pseudogene Homo_sapiens 0 403
ENST00000425692 KRT16P6-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 438
ENST00000438131 KRT42P-001 processed_transcript Homo_sapiens 0 207
ENST00000441550 KRT14-002 retained_intron Homo_sapiens 2e-40 171
ENST00000458290 KRT15-006 protein_coding Homo_sapiens 0 235
ENST00000458343 KRT42P-003 transcribed_unprocessed_pseudogene Homo_sapiens 0 309
ENST00000474031 KRT15-008 retained_intron Homo_sapiens 0 298
ENST00000476662 KRT14-003 retained_intron Homo_sapiens 0 486
ENST00000493253 KRT17-003 retained_intron Homo_sapiens 0 459
ENST00000540235 KRT17-201 protein_coding Homo_sapiens 0 459
ENST00000577750 KRT16P1-005 retained_intron Homo_sapiens 2e-32 143
ENST00000581146 KRT17P2-004 retained_intron Homo_sapiens 0 215
ENST00000582047 KRT17P1-004 retained_intron Homo_sapiens 0 215
ENST00000584481 KRT16P6-004 processed_transcript Homo_sapiens 0 235
ENST00000584769 KRT17P2-003 processed_transcript Homo_sapiens 0 337
ENST00000584962 KRT16P1-002 retained_intron Homo_sapiens 2e-32 145
ENST00000593067 KRT16-003 protein_coding Homo_sapiens 0 276

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