C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 42
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000017270 Krt42-001 ENSMUSG00000053654 10090 - 11:100262887-100269871 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastOvaryPlacentaTestisENSMUST00000017270
Transcript ID Bladder Brain Breast Ovary Placenta Testis
ENSMUST00000017270 0.005±0.00 0.092±0.00 0.063±0.00 0.062±0.00 0.830±0.96 0.128±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_000X CGP 11:100256217-100269871
CIL_0000TT CIL_0000TT_0003 CGP 11:100262882-100322096

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005737 IEA cytoplasm
GO:0005882 IEA intermediate filament
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000167586 KRT14-001 protein_coding Homo_sapiens 0 1002
ENST00000246635 KRT13-001 protein_coding Homo_sapiens 0 612
ENST00000251643 KRT12-001 protein_coding Homo_sapiens 0 285
ENST00000254043 KRT15-001 protein_coding Homo_sapiens 0 617
ENST00000300992 KRT17P2-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 785
ENST00000301653 KRT16-001 protein_coding Homo_sapiens 0 795
ENST00000311208 KRT17-001 protein_coding Homo_sapiens 0 926
ENST00000326333 KRT17P2-002 processed_transcript Homo_sapiens 0 496
ENST00000336861 KRT13-002 protein_coding Homo_sapiens 0 612
ENST00000361566 KRT19-001 protein_coding Homo_sapiens 0 549
ENST00000393974 KRT15-004 protein_coding Homo_sapiens 0 435
ENST00000393976 KRT15-007 protein_coding Homo_sapiens 0 617
ENST00000398469 KRT42P-002 processed_transcript Homo_sapiens 0 387
ENST00000399124 KRT16P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 641
ENST00000399211 KRT17P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 815
ENST00000414673 KRT16P2-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 658
ENST00000417510 KRT16P6-002 processed_transcript Homo_sapiens 0 658
ENST00000420566 KRT17P3-001 unprocessed_pseudogene Homo_sapiens 0 819
ENST00000425692 KRT16P6-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 865
ENST00000438131 KRT42P-001 processed_transcript Homo_sapiens 0 207
ENST00000441550 KRT14-002 retained_intron Homo_sapiens 2e-40 171
ENST00000453883 KRT16P4-001 transcribed_processed_pseudogene Homo_sapiens 6.99949e-42 174
ENST00000455284 KRT16P5-001 processed_pseudogene Homo_sapiens 6.99949e-42 174
ENST00000455635 KRT19-002 protein_coding Homo_sapiens 0 254
ENST00000458290 KRT15-006 protein_coding Homo_sapiens 0 372
ENST00000458343 KRT42P-003 transcribed_unprocessed_pseudogene Homo_sapiens 0 387
ENST00000464634 KRT13-006 nonsense_mediated_decay Homo_sapiens 0 606
ENST00000468313 KRT13-003 retained_intron Homo_sapiens 0 606
ENST00000468880 KRT19-005 retained_intron Homo_sapiens 0 250
ENST00000474031 KRT15-008 retained_intron Homo_sapiens 0 435
ENST00000476662 KRT14-003 retained_intron Homo_sapiens 0 708
ENST00000479031 KRT19-004 retained_intron Homo_sapiens 0 211
ENST00000493253 KRT17-003 retained_intron Homo_sapiens 0 459
ENST00000540235 KRT17-201 protein_coding Homo_sapiens 0 839
ENST00000572470 KRT12-001 protein_coding Homo_sapiens 0 285
ENST00000577750 KRT16P1-005 retained_intron Homo_sapiens 2e-32 143
ENST00000580052 KRT16P4-002 processed_transcript Homo_sapiens 1e-27 126
ENST00000581146 KRT17P2-004 retained_intron Homo_sapiens 0 215
ENST00000582047 KRT17P1-004 retained_intron Homo_sapiens 0 215
ENST00000583748 KRT16P6-003 processed_transcript Homo_sapiens 0 206
ENST00000584481 KRT16P6-004 processed_transcript Homo_sapiens 0 235
ENST00000584769 KRT17P2-003 processed_transcript Homo_sapiens 0 553
ENST00000584962 KRT16P1-002 retained_intron Homo_sapiens 2e-32 145
ENST00000587435 KRT13-008 protein_coding Homo_sapiens 1e-19 100
ENST00000587544 KRT13-005 protein_coding Homo_sapiens 0 612
ENST00000590425 KRT13-007 protein_coding Homo_sapiens 0 363
ENST00000593067 KRT16-003 protein_coding Homo_sapiens 0 621
ENST00000593096 KRT19-007 protein_coding Homo_sapiens 0 348

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