C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000TT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000094041-ENSDARG00000012688 CGP 7955 19:5991533-6045813
GeneTranscriptPositionBiotype
ENSDARG00000012688 (eif1b)
eukaryotic translation initiation factor 1B 		ENSDART00000009132 (eif1b-201) 6042298-6045806 protein_coding
ENSDART00000132874 (eif1b-001) 6042209-6045813 protein_coding
ENSDART00000151383 (eif1b-003) 6042307-6045286 retained_intron
ENSDART00000151582 (eif1b-002) 6042294-6045249 retained_intron
ENSDARG00000036830 (KRT23 (1 of 2))
 ENSDART00000000221 (KRT23 (1 of 2)-001) 6002766-6004973 protein_coding
ENSDART00000105803 (KRT23 (1 of 2)-201) 5986769-6004894 protein_coding
ENSDART00000146890 (KRT23 (1 of 2)-003) 6003796-6004910 nonsense_mediated_decay
ENSDART00000151644 (KRT23 (1 of 2)-002) 6003705-6004502 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_0000TT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000128422-ENSG00000173812 CGP 9606 17:41619437-41692668
GeneTranscriptPositionBiotype
ENSG00000128422 (KRT17)
keratin 17 		ENST00000311208 (KRT17-001) 41619437-41624577 protein_coding
ENST00000463128 (KRT17-002) 41621026-41624842 protein_coding
ENST00000491673 (KRT17-004) 41622873-41624575 retained_intron
ENST00000493253 (KRT17-003) 41619446-41624296 retained_intron
ENST00000540235 (KRT17-201) 41619443-41624541 protein_coding
ENST00000577817 (KRT17-005) 41621627-41624464 protein_coding
ENST00000590038 (KRT17-006) 41621662-41623268 protein_coding
ENSG00000173812 (EIF1)
eukaryotic translation initiation factor 1 		ENST00000310837 (EIF1-003) 41688901-41691630 processed_transcript
ENST00000462917 (EIF1-002) 41688885-41691646 retained_intron
ENST00000469257 (EIF1-001) 41688893-41692668 protein_coding
ENST00000469308 (EIF1-005) 41688935-41690999 processed_transcript
ENST00000482111 (EIF1-004) 41688895-41691622 retained_intron
ENST00000586699 (EIF1-009) 41689903-41690620 protein_coding
ENST00000591776 (EIF1-010) 41688887-41691212 protein_coding
ENSG00000214514 (KRT42P)
keratin 42 pseudogene 		ENST00000398469 (KRT42P-002) 41626327-41640199 processed_transcript
ENST00000438131 (KRT42P-001) 41626327-41635413 processed_transcript
ENST00000458343 (KRT42P-003) 41627887-41630592 transcribed_unprocessed_pseudogene
ENST00000587335 (KRT42P-006) 41627950-41628766 retained_intron
ENST00000587390 (KRT42P-005) 41630477-41635552 processed_transcript
ENST00000589633 (KRT42P-004) 41630554-41635674 processed_transcript
ENSG00000278954 (RP13-415G19.2)
 ENST00000622936 (RP13-415G19.2-001) 41665566-41668031 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0000TT_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000053654-ENSMUSG00000035530 CGP 10090 11:100262882-100322096
GeneTranscriptPositionBiotype
ENSMUSG00000035530 (Eif1)
eukaryotic translation initiation factor 1 		ENSMUST00000049385 (Eif1-001) 100319885-100322096 protein_coding
ENSMUST00000132618 (Eif1-005) 100320884-100321533 processed_transcript
ENSMUST00000139846 (Eif1-003) 100320518-100321349 processed_transcript
ENSMUST00000151513 (Eif1-002) 100320209-100320989 protein_coding
ENSMUST00000152521 (Eif1-004) 100320708-100321749 protein_coding
ENSMUSG00000053654 (Krt42)
keratin 42 		ENSMUST00000017270 (Krt42-001) 100262887-100269871 protein_coding
ENSMUST00000107406 (Krt42-002) 100262882-100265978 retained_intron
ENSMUSG00000086163 (Gm14206)
predicted gene 14206 		ENSMUST00000132973 (Gm14206-001) 100278706-100291286 antisense
ENSMUSG00000087265 (Gm12349)
predicted gene 12349 		ENSMUST00000153030 (Gm12349-001) 100291671-100293711 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000TT_0001ENSDARG00000012688ENSDART00000009132ENSDART00000132874ENSDART00000151383ENSDART00000151582ENSDARG00000036830ENSDART00000000221ENSDART00000105803ENSDART00000146890ENSDART00000151644CIL_0000TT_0002ENSG00000128422ENST00000311208ENST00000463128ENST00000491673ENST00000493253ENST00000540235ENST00000577817ENST00000590038ENSG00000173812ENST00000310837ENST00000462917ENST00000469257ENST00000469308ENST00000482111ENST00000586699ENST00000591776ENSG00000214514ENST00000398469ENST00000438131ENST00000458343ENST00000587335ENST00000587390ENST00000589633ENSG00000278954ENST00000622936CIL_0000TT_0003ENSMUSG00000035530ENSMUST00000049385ENSMUST00000132618ENSMUST00000139846ENSMUST00000151513ENSMUST00000152521ENSMUSG00000053654ENSMUST00000017270ENSMUST00000107406ENSMUSG00000086163ENSMUST00000132973ENSMUSG00000087265ENSMUST00000153030
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000TT_0001ENSDARG00000012688ENSDART00000009132ENSDART00000132874ENSDARG00000036830ENSDART00000000221CIL_0000TT_0002ENSG00000128422ENST00000311208ENST00000463128ENST00000491673ENST00000493253ENST00000540235ENST00000577817ENSG00000173812ENST00000310837ENST00000462917ENST00000469257ENST00000469308ENST00000482111ENST00000591776ENSG00000214514ENST00000398469ENST00000438131ENST00000458343ENST00000587335ENST00000587390ENST00000589633ENSG00000278954ENST00000622936CIL_0000TT_0003ENSMUSG00000035530ENSMUST00000049385ENSMUST00000132618ENSMUST00000139846ENSMUST00000151513ENSMUSG00000053654ENSMUST00000017270ENSMUST00000107406ENSMUSG00000086163ENSMUST00000132973ENSMUSG00000087265ENSMUST00000153030
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000012688 ENSDART00000009132 N/A N/A N/A 169.052±100.79 N/A N/A 208.214±145.10 54.609±65.54 30.927±0.00 N/A 433.522±0.00 N/A N/A N/A
ENSDART00000132874 N/A N/A N/A N/A N/A N/A 8.256±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000151383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000151582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000036830 ENSDART00000000221 N/A N/A N/A 8.678±13.28 N/A N/A 157.946±73.13 42.354±50.83 1.319±0.00 N/A 71.594±0.00 N/A N/A N/A
ENSDART00000105803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000146890 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000151644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000128422 ENST00000311208 N/A N/A N/A N/A 15.520±7.27 N/A 0.077±0.00 N/A N/A 3.998±3.56 N/A 131.109±178.58 33.607±7.94 N/A
ENST00000463128 N/A N/A N/A N/A 3.034±0.00 N/A N/A N/A N/A 0.522±0.00 N/A 260.966±236.17 47.011±0.00 N/A
ENST00000491673 N/A N/A 0.053±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493253 N/A 0.050±0.00 N/A N/A 12.014±0.00 N/A 0.067±0.00 N/A 0.886±0.00 0.837±0.00 N/A N/A N/A N/A
ENST00000540235 0.985±0.00 N/A N/A N/A 51.345±0.00 0.483±0.41 0.073±0.00 0.158±0.00 N/A 8.888±8.40 N/A N/A N/A N/A
ENST00000577817 N/A N/A 0.124±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 15.320±0.00 N/A N/A
ENST00000590038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000173812 ENST00000310837 160.996±0.00 152.162±0.00 9.003±0.00 101.113±87.59 99.720±85.04 134.219±120.51 77.999±68.23 169.059±0.00 31.102±18.19 164.428±150.13 248.460±177.67 219.940±135.83 38.478±0.00 160.184±0.00
ENST00000462917 N/A N/A 1.403±0.00 N/A 2.298±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469257 N/A N/A 1.532±0.00 14.731±4.13 3.210±0.00 1.757±0.00 0.990±0.00 N/A 4.555±0.00 3.357±0.00 6.036±0.00 23.237±18.24 N/A N/A
ENST00000469308 219.585±0.00 166.884±0.00 N/A N/A 153.933±0.00 225.071±0.00 170.674±0.00 81.586±71.54 125.938±0.00 192.037±0.00 146.678±127.51 525.039±563.42 169.066±81.30 237.368±54.78
ENST00000482111 N/A N/A N/A N/A N/A 5.122±0.00 2.930±0.00 14.552±0.00 5.392±0.00 4.478±0.00 N/A 80.304±67.46 58.850±0.00 34.227±0.00
ENST00000586699 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591776 242.232±0.00 171.339±0.00 5.077±0.00 108.802±0.00 91.728±84.96 154.598±148.86 96.534±91.91 155.661±0.00 49.375±40.30 347.892±0.00 275.364±259.73 249.501±225.46 87.758±26.82 155.537±41.65
ENSG00000214514 ENST00000398469 N/A N/A N/A 0.040±0.00 0.029±0.00 N/A N/A 0.019±0.00 0.017±0.00 0.112±0.00 0.008±0.00 0.147±0.06 N/A 0.280±0.00
ENST00000438131 N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A N/A N/A N/A 0.099±0.07 N/A 0.410±0.00
ENST00000458343 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.609±0.00 N/A 0.426±0.37 N/A N/A
ENST00000587335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.399±0.00 N/A N/A
ENST00000587390 N/A 0.387±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.218±0.00 0.163±0.00 N/A
ENST00000589633 0.573±0.00 0.643±0.00 N/A 1.811±0.00 0.195±0.00 0.653±0.00 0.137±0.00 0.408±0.00 0.257±0.00 0.466±0.00 0.247±0.00 N/A N/A N/A
ENSG00000278954 ENST00000622936 0.009±0.00 N/A N/A 0.016±0.00 0.011±0.00 N/A N/A N/A N/A N/A N/A 0.448±0.14 N/A 0.119±0.10
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000035530 ENSMUST00000049385 59.123±3.67 88.756±15.72 136.100±13.84 87.409±3.82 70.425±3.54 69.519±5.57 91.666±4.83 74.719±10.18 79.402±30.85 83.950±6.27 264.409±8.55 66.123±20.21 90.195±22.29 102.256±35.79
ENSMUST00000132618 N/A N/A 148.833±0.00 160.301±0.00 N/A N/A N/A N/A 147.962±63.21 N/A N/A 192.022±24.70 237.414±94.68 200.205±105.15
ENSMUST00000139846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 86.592±0.00 253.765±53.49 147.415±0.00
ENSMUST00000151513 N/A N/A N/A N/A N/A 11.255±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000053654 ENSMUST00000017270 N/A N/A 0.005±0.00 0.092±0.00 0.063±0.00 N/A N/A N/A N/A N/A N/A 0.062±0.00 0.830±0.96 0.128±0.09
ENSMUST00000107406 N/A 0.050±0.01 N/A 0.031±0.01 0.059±0.02 0.076±0.05 N/A N/A 0.009±0.00 0.033±0.00 N/A 0.051±0.00 1.079±1.22 0.145±0.10
ENSMUSG00000086163 ENSMUST00000132973 N/A N/A 0.507±0.00 0.024±0.00 0.181±0.09 0.298±0.19 N/A N/A N/A 0.087±0.04 N/A 0.170±0.05 0.768±0.06 0.103±0.07
ENSMUSG00000087265 ENSMUST00000153030 0.056±0.00 N/A N/A N/A 2.513±0.52 0.331±0.16 0.101±0.03 0.062±0.00 0.013±0.00 0.363±0.08 0.113±0.00 0.465±0.41 0.158±0.15 0.057±0.00

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