C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: musashi RNA-binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000054256 Msi1 10090 + 5:115429599-115455698 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000067168 Msi1-004 115429997-115454080 protein_coding
  ENSMUST00000130849 Msi1-009 115435498-115445694 retained_intron
  ENSMUST00000131079 Msi1-003 115430605-115450906 processed_transcript
  ENSMUST00000136586 Msi1-008 115434996-115450883 processed_transcript
  ENSMUST00000139918 Msi1-006 115433751-115450899 retained_intron
  ENSMUST00000145005 Msi1-005 115433392-115435651 processed_transcript
  ENSMUST00000145840 Msi1-007 115434300-115445472 processed_transcript
  ENSMUST00000150779 Msi1-001 115429599-115455698 protein_coding
  ENSMUST00000151444 Msi1-002 115429699-115448987 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067168ENSMUST00000130849ENSMUST00000131079ENSMUST00000136586ENSMUST00000139918ENSMUST00000145840ENSMUST00000150779ENSMUST00000151444
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067168 2.505±2.26 5.588±1.10 0.429±0.05 36.270±3.05 1.261±0.54 1.513±0.35 0.117±0.01 0.511±0.15 0.336±0.14 0.204±0.06 0.070±0.03 10.425±2.50 0.742±0.28 16.177±1.00
ENSMUST00000130849 N/A N/A N/A N/A N/A N/A 0.165±0.00 N/A N/A N/A 0.079±0.00 N/A N/A N/A
ENSMUST00000131079 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.286±0.00 N/A N/A
ENSMUST00000136586 N/A N/A N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A N/A
ENSMUST00000139918 N/A N/A N/A N/A 0.353±0.00 N/A 0.121±0.02 N/A 0.048±0.00 0.775±0.00 N/A N/A N/A N/A
ENSMUST00000145840 N/A N/A N/A 5.524±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.350±0.00 N/A
ENSMUST00000150779 1.552±0.90 2.648±1.19 0.353±0.07 30.919±20.84 0.442±0.24 0.686±0.19 0.085±0.00 N/A 0.157±0.14 0.122±0.00 0.060±0.03 5.148±2.62 0.337±0.23 6.469±5.42
ENSMUST00000151444 N/A N/A N/A N/A N/A N/A 0.050±0.00 N/A 0.021±0.00 N/A N/A N/A 0.073±0.02 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZA CIL_0007ZA_0002 VISTA 5:114966986-115567561
CIL_0009CQ CIL_0009CQ_0002 VISTA 5:115188390-115791906

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003727 IDA single-stranded RNA binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005844 IDA polysome
GO:0008266 IDA poly(U) RNA binding
GO:0009725 IEA response to hormone
GO:0030855 IEA epithelial cell differentiation
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010710 msi1 musashi homolog 1 (Drosophila) protein_coding Danio_rerio
ENSG00000135097 MSI1 musashi RNA-binding protein 1 protein_coding Homo_sapiens

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