C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: musashi RNA-binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000150779 Msi1-001 ENSMUSG00000054256 10090 + 5:115429599-115455698 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000150779
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000150779 1.552±0.90 2.648±1.19 0.353±0.07 30.919±20.84 0.442±0.24 0.686±0.19 0.085±0.00 0.157±0.14 0.122±0.00 0.060±0.03 5.148±2.62 0.337±0.23 6.469±5.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZA CIL_0007ZA_0002 VISTA 5:114966986-115567561
CIL_0009CQ CIL_0009CQ_0002 VISTA 5:115188390-115791906

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003727 IDA single-stranded RNA binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005844 IDA polysome
GO:0008266 IDA poly(U) RNA binding
GO:0009725 IEA response to hormone
GO:0030855 IEA epithelial cell differentiation
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257552 MSI1-001 protein_coding Homo_sapiens 0 2122
ENST00000276123 ZNF711-002 protein_coding Homo_sapiens 0.00006 55
ENST00000306422 OTP-001 protein_coding Homo_sapiens 0.00002 57
ENST00000373165 ZNF711-001 protein_coding Homo_sapiens 0.00006 55
ENST00000546622 MSI1-003 processed_transcript Homo_sapiens 0 411
ENST00000546985 MSI1-002 protein_coding Homo_sapiens 0 721

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