C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif-containing 65
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000054517 Trim65 10090 - 11:116121846-116131128 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000067632 Trim65-001 116124708-116131126 protein_coding
  ENSMUST00000106440 Trim65-003 116121846-116131124 protein_coding
  ENSMUST00000154061 Trim65-002 116124708-116131128 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067632ENSMUST00000106440ENSMUST00000154061
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067632 3.726±0.41 4.544±0.61 2.725±0.00 0.576±0.04 6.173±1.32 4.174±0.35 1.800±0.14 2.028±0.05 1.299±0.64 7.110±0.42 0.624±0.08 4.211±1.15 0.648±0.27 0.093±0.00
ENSMUST00000106440 3.302±0.53 3.873±0.52 3.512±0.88 0.659±0.44 5.207±1.27 3.703±0.25 1.626±0.51 2.578±0.48 1.308±0.55 5.082±0.00 0.961±0.27 3.554±1.38 0.637±0.06 0.209±0.00
ENSMUST00000154061 N/A N/A N/A N/A N/A N/A N/A N/A 0.791±0.06 N/A N/A 0.739±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0002 VISTA 11:116019003-116619995
CIL_00078U CIL_00078U_0002 CGP 11:116078573-116127210
CIL_00078V CIL_00078V_0002 CGP 11:116105752-116131128
CIL_0003KG CIL_0003KG_0003 CGP 11:116121846-116138868

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077098 trim65 tripartite motif containing 65 protein_coding Danio_rerio
ENSG00000141569 TRIM65 tripartite motif containing 65 protein_coding Homo_sapiens

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