C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00078V_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000132481-ENSG00000141569 CGP 9606 17:75874161-75897003
GeneTranscriptPositionBiotype
ENSG00000132481 (TRIM47)
tripartite motif containing 47 		ENST00000254816 (TRIM47-001) 75874161-75878575 protein_coding
ENST00000585333 (TRIM47-007) 75874164-75874892 protein_coding
ENST00000586495 (TRIM47-004) 75876435-75877264 protein_coding
ENST00000587339 (TRIM47-002) 75874164-75878196 protein_coding
ENST00000587774 (TRIM47-003) 75876434-75878213 retained_intron
ENST00000592942 (TRIM47-006) 75874523-75875591 retained_intron
ENST00000593089 (TRIM47-005) 75875841-75876394 retained_intron
ENSG00000141569 (TRIM65)
tripartite motif containing 65 		ENST00000269383 (TRIM65-001) 75888960-75897003 protein_coding
ENST00000540128 (TRIM65-005) 75891180-75896911 protein_coding
ENST00000540812 (TRIM65-004) 75892583-75896640 retained_intron
ENST00000543309 (TRIM65-003) 75891023-75896558 protein_coding
ENST00000591668 (TRIM65-007) 75880335-75892303 protein_coding
ENST00000592642 (TRIM65-008) 75880444-75892149 protein_coding
ENSG00000267801 (RP11-552F3.9)
 ENST00000586076 (RP11-552F3.9-001) 75876372-75879546 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_00078V_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020773-ENSMUSG00000054517 CGP 10090 11:116105752-116131128
GeneTranscriptPositionBiotype
ENSMUSG00000020773 (Trim47)
tripartite motif-containing 47 		ENSMUST00000021120 (Trim47-002) 116105752-116110246 protein_coding
ENSMUST00000106441 (Trim47-001) 116105752-116110237 protein_coding
ENSMUST00000127235 (Trim47-005) 116106339-116107740 processed_transcript
ENSMUST00000133039 (Trim47-007) 116107811-116127210 processed_transcript
ENSMUST00000134691 (Trim47-004) 116106392-116108035 processed_transcript
ENSMUST00000141531 (Trim47-003) 116105752-116108119 processed_transcript
ENSMUST00000149957 (Trim47-006) 116106209-116107083 processed_transcript
ENSMUSG00000054517 (Trim65)
tripartite motif-containing 65 		ENSMUST00000067632 (Trim65-001) 116124708-116131126 protein_coding
ENSMUST00000106440 (Trim65-003) 116121846-116131124 protein_coding
ENSMUST00000154061 (Trim65-002) 116124708-116131128 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00078V_0001ENSG00000132481ENST00000254816ENST00000585333ENST00000586495ENST00000587339ENST00000587774ENST00000592942ENST00000593089ENSG00000141569ENST00000269383ENST00000540128ENST00000540812ENST00000543309ENST00000591668ENST00000592642ENSG00000267801ENST00000586076CIL_00078V_0002ENSMUSG00000020773ENSMUST00000021120ENSMUST00000106441ENSMUST00000127235ENSMUST00000133039ENSMUST00000134691ENSMUST00000141531ENSMUST00000149957ENSMUSG00000054517ENSMUST00000067632ENSMUST00000106440ENSMUST00000154061
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00078V_0001ENSG00000132481ENST00000254816ENST00000585333ENST00000587339ENST00000592942ENST00000593089ENSG00000141569ENST00000269383ENST00000540128ENST00000543309ENSG00000267801ENST00000586076CIL_00078V_0002ENSMUSG00000020773ENSMUST00000021120ENSMUST00000106441ENSMUST00000127235ENSMUST00000133039ENSMUST00000134691ENSMUST00000141531ENSMUSG00000054517ENSMUST00000067632ENSMUST00000106440ENSMUST00000154061
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000132481 ENST00000254816 N/A N/A N/A 0.679±0.00 0.880±0.00 N/A 1.714±0.00 0.620±0.00 2.014±0.00 N/A 1.146±0.00 5.352±0.00 1.128±0.63 N/A
ENST00000585333 4.267±0.00 26.184±0.00 0.391±0.00 1.151±0.00 7.935±0.00 16.857±0.00 N/A 10.461±0.00 N/A N/A 2.486±0.00 0.822±0.00 N/A 12.842±0.00
ENST00000586495 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587339 6.477±0.00 20.869±0.00 0.484±0.00 6.469±6.29 7.976±0.00 7.790±7.65 3.055±2.90 10.817±0.00 3.165±0.00 17.885±0.00 4.446±0.00 19.059±2.52 6.289±3.54 6.626±4.91
ENST00000587774 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592942 N/A 10.631±0.00 N/A N/A 1.662±0.00 0.794±0.00 N/A 3.597±2.30 N/A 0.690±0.00 3.111±0.00 3.386±2.18 2.136±0.00 N/A
ENST00000593089 N/A N/A N/A N/A N/A N/A 0.376±0.00 N/A N/A 1.422±0.00 N/A 0.941±0.00 N/A N/A
ENSG00000141569 ENST00000269383 4.186±0.00 4.093±0.00 0.248±0.00 0.931±0.00 2.725±0.00 1.510±1.39 1.051±0.00 2.556±0.00 1.712±0.00 1.413±0.86 1.380±1.22 4.251±3.09 2.265±0.48 N/A
ENST00000540128 N/A N/A N/A 1.546±0.00 1.651±0.00 0.789±0.00 N/A N/A N/A N/A N/A 1.336±0.00 N/A N/A
ENST00000540812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543309 N/A N/A N/A N/A 1.995±0.00 N/A N/A N/A N/A N/A 1.304±0.00 N/A N/A N/A
ENST00000591668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592642 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000267801 ENST00000586076 0.978±0.00 N/A 0.191±0.00 1.574±0.00 0.877±0.64 0.365±0.00 0.891±0.00 2.254±0.00 0.733±0.26 2.172±2.03 0.503±0.00 0.887±0.00 0.326±0.00 0.419±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020773 ENSMUST00000021120 9.343±1.29 8.095±4.01 7.122±0.16 0.563±0.08 9.140±1.84 8.035±2.19 3.626±0.21 5.631±2.04 1.349±0.58 8.990±1.28 1.813±0.68 15.169±2.20 2.077±0.14 1.567±0.61
ENSMUST00000106441 8.972±2.86 10.542±3.25 12.441±1.65 1.541±0.71 12.526±2.16 8.240±1.68 4.725±1.41 6.352±0.87 1.803±0.96 10.497±1.08 2.257±0.93 8.592±2.52 3.129±1.21 1.062±0.34
ENSMUST00000127235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.191±0.00 N/A
ENSMUST00000133039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.595±0.00
ENSMUST00000134691 N/A N/A N/A 1.366±0.00 N/A N/A N/A N/A N/A N/A N/A 6.538±0.00 2.902±0.00 1.501±0.00
ENSMUST00000141531 N/A N/A N/A N/A N/A N/A 2.414±0.00 4.194±0.89 N/A N/A 1.778±0.40 7.736±2.85 1.346±0.00 0.787±0.08
ENSMUST00000149957 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000054517 ENSMUST00000067632 3.726±0.41 4.544±0.61 2.725±0.00 0.576±0.04 6.173±1.32 4.174±0.35 1.800±0.14 2.028±0.05 1.299±0.64 7.110±0.42 0.624±0.08 4.211±1.15 0.648±0.27 0.093±0.00
ENSMUST00000106440 3.302±0.53 3.873±0.52 3.512±0.88 0.659±0.44 5.207±1.27 3.703±0.25 1.626±0.51 2.578±0.48 1.308±0.55 5.082±0.00 0.961±0.27 3.554±1.38 0.637±0.06 0.209±0.00
ENSMUST00000154061 N/A N/A N/A N/A N/A N/A N/A N/A 0.791±0.06 N/A N/A 0.739±0.00 N/A N/A

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