C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adaptor-related protein complex AP-1, sigma 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162342 Ap1s3-001 ENSMUSG00000054702 10090 - 1:79606876-79671972 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000162342
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000162342 5.113±0.46 0.710±0.06 5.828±0.93 1.628±0.84 4.061±0.85 0.344±0.09 3.033±0.77 1.447±0.37 3.295±1.33 1.018±0.00 2.347±1.31 6.174±3.68 1.072±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AM CIL_0004AM_0004 CGP 1:79434669-79671972
CIL_0006XJ CIL_0006XJ_0002 CGP 1:79606876-79776143

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005794 IEA Golgi apparatus
GO:0005905 IEA coated pit
GO:0006886 IEA intracellular protein transport
GO:0008565 IEA protein transporter activity
GO:0016192 IEA vesicle-mediated transport
GO:0030117 IEA membrane coat
GO:0031410 IEA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000334271 AP1S3-003 nonsense_mediated_decay Homo_sapiens 0 337
ENST00000396653 AP1S3-005 protein_coding Homo_sapiens 0 202
ENST00000396654 AP1S3-007 protein_coding Homo_sapiens 0 697
ENST00000409375 AP1S3-006 protein_coding Homo_sapiens 0 363
ENST00000415298 AP1S3-002 nonsense_mediated_decay Homo_sapiens 0 370
ENST00000443700 AP1S3-001 protein_coding Homo_sapiens 0 571
ENST00000444408 AP1S3-004 protein_coding Homo_sapiens 4e-29 132
ENST00000446015 AP1S3-008 protein_coding Homo_sapiens 0 560

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