C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 46
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000054814 Usp46 10090 - 5:73998463-74068430 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000068058 Usp46-001 73998646-74068430 protein_coding
  ENSMUST00000119154 Usp46-002 73998463-74068420 protein_coding
  ENSMUST00000128750 Usp46-003 74001799-74035641 processed_transcript
  ENSMUST00000145016 Usp46-004 74029316-74065744 protein_coding
  ENSMUST00000150009 Usp46-005 74029270-74032591 retained_intron
  ENSMUST00000152408 Usp46-006 74028586-74029366 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068058ENSMUST00000119154ENSMUST00000128750
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068058 4.889±1.00 2.426±0.44 6.110±2.54 7.434±1.28 3.765±0.65 2.206±0.38 4.386±0.72 4.738±0.33 3.684±2.33 7.023±1.18 1.839±0.27 6.015±2.38 6.799±2.42 2.269±1.83
ENSMUST00000119154 N/A N/A N/A N/A N/A N/A N/A N/A 2.670±0.00 N/A N/A N/A N/A N/A
ENSMUST00000128750 N/A 1.763±0.00 N/A 10.650±0.00 N/A 1.657±0.18 N/A N/A 0.975±0.25 N/A N/A 5.386±3.49 11.138±4.65 4.652±1.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001CQ CIL_0001CQ_0002 CGP 5:73651380-74068430
CIL_00082M CIL_00082M_0002 VISTA 5:73965657-74568205

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001662 IMP behavioral fear response
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008343 IMP adult feeding behavior
GO:0016579 ISS protein deubiquitination
GO:0032228 IMP regulation of synaptic transmission, GABAergic
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0048149 IMP behavioral response to ethanol
GO:0060013 IMP righting reflex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045343 usp46 ubiquitin specific peptidase 46 protein_coding Danio_rerio
ENSG00000109189 USP46 ubiquitin specific peptidase 46 protein_coding Homo_sapiens

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