C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 46
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128750 Usp46-003 ENSMUSG00000054814 10090 - 5:74001799-74035641 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonLiverOvaryPlacentaTestisENSMUST00000128750
Transcript ID Adrenal Brain Colon Liver Ovary Placenta Testis
ENSMUST00000128750 1.763±0.00 10.650±0.00 1.657±0.18 0.975±0.25 5.386±3.49 11.138±4.65 4.652±1.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001CQ CIL_0001CQ_0002 CGP 5:73651380-74068430
CIL_00082M CIL_00082M_0002 VISTA 5:73965657-74568205

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000112670 usp12a-001 protein_coding Danio_rerio 0 435
ENST00000441222 USP46-001 protein_coding Homo_sapiens 0 1482
ENST00000451218 USP46-003 protein_coding Homo_sapiens 0 1482
ENST00000502443 USP46-009 retained_intron Homo_sapiens 0 540
ENST00000503060 USP46-004 nonsense_mediated_decay Homo_sapiens 0 1482
ENST00000506707 USP46-007 processed_transcript Homo_sapiens 0 501
ENST00000508499 USP46-005 protein_coding Homo_sapiens 0 1417
ENST00000512656 USP46-008 nonsense_mediated_decay Homo_sapiens 6e-37 158
ENST00000514536 USP46-002 nonsense_mediated_decay Homo_sapiens 0 1264

Loading