C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001CQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163071-ENSG00000109189 CGP 9606 4:52051331-52659335
GeneTranscriptPositionBiotype
ENSG00000109189 (USP46)
ubiquitin specific peptidase 46 		ENST00000441222 (USP46-001) 52590972-52659335 protein_coding
ENST00000451218 (USP46-003) 52594178-52659290 protein_coding
ENST00000502443 (USP46-009) 52626093-52628366 retained_intron
ENST00000503060 (USP46-004) 52596814-52659275 nonsense_mediated_decay
ENST00000504078 (USP46-006) 52631109-52656586 processed_transcript
ENST00000506707 (USP46-007) 52626128-52656573 processed_transcript
ENST00000508499 (USP46-005) 52597581-52656590 protein_coding
ENST00000512656 (USP46-008) 52628061-52656526 nonsense_mediated_decay
ENST00000514536 (USP46-002) 52597467-52659298 nonsense_mediated_decay
ENSG00000163071 (SPATA18)
spermatogenesis associated 18 		ENST00000295213 (SPATA18-001) 52051331-52097292 protein_coding
ENST00000419395 (SPATA18-002) 52051416-52095893 protein_coding
ENST00000503055 (SPATA18-008) 52051461-52062324 nonsense_mediated_decay
ENST00000505038 (SPATA18-009) 52051542-52072032 nonsense_mediated_decay
ENST00000505320 (SPATA18-004) 52051461-52094887 nonsense_mediated_decay
ENST00000506829 (SPATA18-006) 52051412-52072156 processed_transcript
ENST00000508915 (SPATA18-007) 52051416-52072013 nonsense_mediated_decay
ENST00000510549 (SPATA18-010) 52078344-52079900 retained_intron
ENST00000511028 (SPATA18-003) 52051419-52082664 retained_intron
ENST00000514670 (SPATA18-005) 52051409-52076946 processed_transcript
ENSG00000251286 (RP11-588F10.1)
 ENST00000507811 (RP11-588F10.1-001) 52440494-52441535 processed_pseudogene
CIL_0001CQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029155-ENSMUSG00000054814 CGP 10090 5:73651380-74068430
GeneTranscriptPositionBiotype
ENSMUSG00000029155 (Spata18)
spermatogenesis associated 18 		ENSMUST00000041422 (Spata18-201) 73651380-73679096 protein_coding
ENSMUST00000071077 (Spata18-202) 73651380-73679484 protein_coding
ENSMUST00000113548 (Spata18-203) 73657535-73679482 protein_coding
ENSMUST00000178631 (Spata18-204) 73651380-73679096 protein_coding
ENSMUSG00000054814 (Usp46)
ubiquitin specific peptidase 46 		ENSMUST00000068058 (Usp46-001) 73998646-74068430 protein_coding
ENSMUST00000119154 (Usp46-002) 73998463-74068420 protein_coding
ENSMUST00000128750 (Usp46-003) 74001799-74035641 processed_transcript
ENSMUST00000145016 (Usp46-004) 74029316-74065744 protein_coding
ENSMUST00000150009 (Usp46-005) 74029270-74032591 retained_intron
ENSMUST00000152408 (Usp46-006) 74028586-74029366 processed_transcript
ENSMUSG00000087250 (Usp46os1)
ubiquitin specific peptidase 46, opposite strand 1 		ENSMUST00000129275 (Usp46os1-001) 74014216-74029680 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001CQ_0001ENSG00000109189ENST00000441222ENST00000451218ENST00000502443ENST00000503060ENST00000504078ENST00000506707ENST00000508499ENST00000512656ENST00000514536ENSG00000163071ENST00000295213ENST00000419395ENST00000503055ENST00000505038ENST00000505320ENST00000506829ENST00000508915ENST00000510549ENST00000511028ENST00000514670ENSG00000251286ENST00000507811CIL_0001CQ_0002ENSMUSG00000029155ENSMUST00000041422ENSMUST00000071077ENSMUST00000113548ENSMUST00000178631ENSMUSG00000054814ENSMUST00000068058ENSMUST00000119154ENSMUST00000128750ENSMUST00000145016ENSMUST00000150009ENSMUST00000152408ENSMUSG00000087250ENSMUST00000129275
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001CQ_0001ENSG00000109189ENST00000441222ENST00000451218ENST00000503060ENSG00000163071ENST00000295213ENST00000419395ENST00000503055ENST00000505038ENST00000505320ENST00000506829ENST00000510549ENST00000511028ENST00000514670ENSG00000251286ENST00000507811CIL_0001CQ_0002ENSMUSG00000029155ENSMUST00000041422ENSMUST00000071077ENSMUST00000113548ENSMUST00000178631ENSMUSG00000054814ENSMUST00000068058ENSMUST00000119154ENSMUST00000128750ENSMUSG00000087250ENSMUST00000129275
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000109189 ENST00000441222 0.378±0.00 0.131±0.00 N/A 1.302±0.12 0.424±0.00 N/A N/A 0.464±0.00 0.095±0.00 0.111±0.02 0.240±0.00 0.601±0.09 0.277±0.01 0.577±0.06
ENST00000451218 1.292±0.00 0.713±0.00 1.308±0.00 8.630±2.53 1.318±0.42 1.064±0.58 3.077±0.43 1.668±0.95 1.031±0.29 1.021±0.28 2.279±0.00 1.906±0.92 1.507±0.28 2.837±1.05
ENST00000502443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.487±0.00 N/A N/A 1.555±0.00
ENST00000504078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512656 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000163071 ENST00000295213 0.072±0.00 N/A N/A 0.168±0.12 N/A N/A N/A 0.056±0.00 N/A 2.696±0.00 N/A 0.447±0.53 0.214±0.11 N/A
ENST00000419395 0.082±0.00 N/A 0.521±0.00 0.114±0.04 0.567±0.00 0.351±0.00 N/A N/A 0.262±0.00 2.467±0.00 N/A 0.120±0.03 0.359±0.00 7.755±2.78
ENST00000503055 N/A N/A N/A N/A N/A N/A N/A 1.675±0.00 N/A N/A N/A N/A N/A N/A
ENST00000505038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.513±0.00 N/A
ENST00000505320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 30.173±11.35
ENST00000506829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 85.410±0.00
ENST00000508915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510549 N/A N/A N/A N/A 1.983±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511028 N/A N/A N/A N/A 0.266±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.888±0.00 N/A N/A
ENSG00000251286 ENST00000507811 N/A N/A N/A 0.014±0.00 N/A N/A 0.267±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029155 ENSMUST00000041422 N/A 0.075±0.00 N/A 0.202±0.00 N/A N/A 0.191±0.06 N/A N/A N/A N/A 2.932±0.54 0.018±0.00 N/A
ENSMUST00000071077 N/A N/A 0.023±0.00 N/A N/A N/A 0.172±0.06 N/A N/A 7.550±1.56 N/A 3.984±2.64 N/A 209.543±5.96
ENSMUST00000113548 0.044±0.02 N/A 0.006±0.00 0.254±0.00 0.036±0.01 N/A 0.222±0.00 0.057±0.03 0.016±0.01 3.621±1.00 0.030±0.00 2.906±1.18 0.008±0.00 N/A
ENSMUST00000178631 N/A N/A N/A 0.276±0.00 0.055±0.00 N/A 0.110±0.00 0.069±0.01 0.021±0.00 N/A 0.032±0.00 4.666±0.00 0.016±0.00 62.760±14.84
ENSMUSG00000054814 ENSMUST00000068058 4.889±1.00 2.426±0.44 6.110±2.54 7.434±1.28 3.765±0.65 2.206±0.38 4.386±0.72 4.738±0.33 3.684±2.33 7.023±1.18 1.839±0.27 6.015±2.38 6.799±2.42 2.269±1.83
ENSMUST00000119154 N/A N/A N/A N/A N/A N/A N/A N/A 2.670±0.00 N/A N/A N/A N/A N/A
ENSMUST00000128750 N/A 1.763±0.00 N/A 10.650±0.00 N/A 1.657±0.18 N/A N/A 0.975±0.25 N/A N/A 5.386±3.49 11.138±4.65 4.652±1.11
ENSMUST00000145016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152408 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000087250 ENSMUST00000129275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.066±4.14

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