C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 46
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000068058 Usp46-001 ENSMUSG00000054814 10090 - 5:73998646-74068430 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068058
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068058 4.889±1.00 2.426±0.44 6.110±2.54 7.434±1.28 3.765±0.65 2.206±0.38 4.386±0.72 4.738±0.33 3.684±2.33 7.023±1.18 1.839±0.27 6.015±2.38 6.799±2.42 2.269±1.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001CQ CIL_0001CQ_0002 CGP 5:73651380-74068430
CIL_00082M CIL_00082M_0002 VISTA 5:73965657-74568205

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001662 IMP behavioral fear response
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008343 IMP adult feeding behavior
GO:0016579 ISS protein deubiquitination
GO:0032228 IMP regulation of synaptic transmission, GABAergic
GO:0048149 IMP behavioral response to ethanol
GO:0060013 IMP righting reflex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000132093 usp46-001 protein_coding Danio_rerio 0 802
ENSDART00000112670 usp12a-001 protein_coding Danio_rerio 0 499
ENST00000441222 USP46-001 protein_coding Homo_sapiens 0 2052
ENST00000451218 USP46-003 protein_coding Homo_sapiens 0 1700
ENST00000502443 USP46-009 retained_intron Homo_sapiens 0 536
ENST00000503060 USP46-004 nonsense_mediated_decay Homo_sapiens 0 1825
ENST00000504078 USP46-006 processed_transcript Homo_sapiens 0.000000001 68
ENST00000506707 USP46-007 processed_transcript Homo_sapiens 0 636
ENST00000508499 USP46-005 protein_coding Homo_sapiens 0 1552
ENST00000512656 USP46-008 nonsense_mediated_decay Homo_sapiens 6e-37 158
ENST00000514536 USP46-002 nonsense_mediated_decay Homo_sapiens 0 1399

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