C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 46
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145016 Usp46-004 ENSMUSG00000054814 10090 - 5:74029316-74065744 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001CQ CIL_0001CQ_0002 CGP 5:73651380-74068430
CIL_00082M CIL_00082M_0002 VISTA 5:73965657-74568205

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001662 IMP behavioral fear response
GO:0005575 ND cellular_component
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008343 IMP adult feeding behavior
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0048149 IMP behavioral response to ethanol
GO:0060013 IMP righting reflex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000441222 USP46-001 protein_coding Homo_sapiens 0 544
ENST00000451218 USP46-003 protein_coding Homo_sapiens 0 409
ENST00000502443 USP46-009 retained_intron Homo_sapiens 0 409
ENST00000503060 USP46-004 nonsense_mediated_decay Homo_sapiens 0 558
ENST00000504078 USP46-006 processed_transcript Homo_sapiens 0.0000000001 71
ENST00000506707 USP46-007 processed_transcript Homo_sapiens 0 547
ENST00000508499 USP46-005 protein_coding Homo_sapiens 0 558
ENST00000512656 USP46-008 nonsense_mediated_decay Homo_sapiens 6e-37 158
ENST00000514536 USP46-002 nonsense_mediated_decay Homo_sapiens 0 544

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