C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000055368 Slc6a2 10090 + 8:92960079-93001667 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000072939 Slc6a2-201 92961047-93001667 protein_coding
  ENSMUST00000165470 Slc6a2-202 92960079-92998924 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072939ENSMUST00000165470
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072939 7.740±7.57 1.285±0.00 0.389±0.09 0.252±0.00 0.085±0.02 0.026±0.00 0.998±0.00 0.004±0.00 8.471±1.98 0.064±0.01 0.685±0.46 10.364±8.09 0.018±0.01
ENSMUST00000165470 N/A N/A N/A N/A 0.178±0.03 0.025±0.01 0.239±0.09 0.003±0.00 2.025±0.00 N/A 0.349±0.15 18.202±6.51 0.025±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000988 CIL_000988_0002 VISTA 8:92435258-93036114
CIL_00098D CIL_00098D_0002 VISTA 8:92442867-93044200
CIL_0005R5 CIL_0005R5_0002 CGP 8:92901407-93001667
CIL_00048S CIL_00048S_0002 CGP 8:92960079-93048192

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005333 IEA norepinephrine transmembrane transporter activity
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006836 IDA neurotransmitter transport
GO:0008504 ISO monoamine transmembrane transporter activity
GO:0009986 IEA cell surface
GO:0015844 ISO monoamine transport
GO:0015874 IEA norepinephrine transport
GO:0042493 IEA response to drug
GO:0043005 IEA neuron projection
GO:0043014 IEA alpha-tubulin binding
GO:0045121 IEA membrane raft
GO:0048265 IMP response to pain
GO:0048487 IEA beta-tubulin binding
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016141 slc6a2 solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2 protein_coding Danio_rerio
ENSG00000103546 SLC6A2 solute carrier family 6 (neurotransmitter transporter), member 2 protein_coding Homo_sapiens

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