C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165470 Slc6a2-202 ENSMUSG00000055368 10090 + 8:92960079-92998924 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000165470
Transcript ID Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000165470 0.178±0.03 0.025±0.01 0.239±0.09 0.003±0.00 2.025±0.00 0.349±0.15 18.202±6.51 0.025±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000988 CIL_000988_0002 VISTA 8:92435258-93036114
CIL_00098D CIL_00098D_0002 VISTA 8:92442867-93044200
CIL_0005R5 CIL_0005R5_0002 CGP 8:92901407-93001667
CIL_00048S CIL_00048S_0002 CGP 8:92960079-93048192

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005887 IEA integral component of plasma membrane
GO:0006836 IDA neurotransmitter transport
GO:0008504 ISO monoamine transmembrane transporter activity
GO:0015844 ISO monoamine transport
GO:0048265 IMP response to pain
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000148430 slc6a2-001 protein_coding Danio_rerio 0 490
ENSDART00000012580 slc6a2-201 protein_coding Danio_rerio 0 462
ENST00000219833 SLC6A2-201 protein_coding Homo_sapiens 0 2050
ENST00000379906 SLC6A2-001 protein_coding Homo_sapiens 0 2176
ENST00000414754 SLC6A2-003 protein_coding Homo_sapiens 0 1807
ENST00000561820 SLC6A2-007 protein_coding Homo_sapiens 0 1975
ENST00000566163 SLC6A2-006 protein_coding Homo_sapiens 0 1038
ENST00000567238 SLC6A2-005 protein_coding Homo_sapiens 0 1729
ENST00000568529 SLC6A2-009 protein_coding Homo_sapiens 0 874
ENST00000568655 SLC6A2-008 protein_coding Homo_sapiens 0 654
ENST00000568943 SLC6A2-004 protein_coding Homo_sapiens 0 2078

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