C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: R3H domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000056211 R3hdm1 10090 + 1:128103301-128237736 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000036288 R3hdm1-001 128103324-128237736 protein_coding
  ENSMUST00000185389 R3hdm1-010 128103331-128111788 retained_intron
  ENSMUST00000185471 R3hdm1-005 128176837-128188656 retained_intron
  ENSMUST00000185853 R3hdm1-015 128179143-128193500 protein_coding
  ENSMUST00000187023 R3hdm1-011 128141964-128186909 protein_coding
  ENSMUST00000187557 R3hdm1-012 128141987-128153326 protein_coding
  ENSMUST00000187605 R3hdm1-009 128171631-128178143 retained_intron
  ENSMUST00000187900 R3hdm1-004 128103324-128188856 protein_coding
  ENSMUST00000188381 R3hdm1-003 128103321-128179129 protein_coding
  ENSMUST00000188570 R3hdm1-007 128235379-128237736 retained_intron
  ENSMUST00000189317 R3hdm1-013 128151814-128179182 protein_coding
  ENSMUST00000189982 R3hdm1-008 128192832-128196540 retained_intron
  ENSMUST00000190056 R3hdm1-016 128181741-128211239 protein_coding
  ENSMUST00000190288 R3hdm1-006 128206992-128237735 retained_intron
  ENSMUST00000191016 R3hdm1-002 128103301-128183131 retained_intron
  ENSMUST00000191274 R3hdm1-014 128174693-128179117 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036288ENSMUST00000188381ENSMUST00000188570ENSMUST00000189317ENSMUST00000190056ENSMUST00000190288
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036288 5.599±3.01 5.765±1.63 3.413±1.58 9.635±4.33 4.759±1.61 4.100±2.52 3.722±0.68 2.457±0.94 1.204±0.42 2.605±0.91 11.739±1.34 5.269±1.10 2.232±0.35 6.734±1.14
ENSMUST00000188381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.296±0.00 N/A
ENSMUST00000188570 N/A N/A 10.464±1.10 24.241±0.00 N/A N/A N/A 4.541±0.49 8.323±0.91 N/A 6.103±0.26 12.222±0.00 6.440±0.00 27.991±2.23
ENSMUST00000189317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.247±0.09 31.030±0.00
ENSMUST00000190056 N/A 8.885±2.31 N/A N/A 6.821±1.28 6.424±0.45 N/A N/A 4.376±3.85 6.465±0.00 N/A 12.092±3.53 N/A 35.418±0.00
ENSMUST00000190288 N/A N/A N/A 3.811±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003S4 CIL_0003S4_0003 CGP 1:127954184-128237736
CIL_0006VO CIL_0006VO_0002 CGP 1:128103301-128279378

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063141 r3hdm1 R3H domain containing 1 protein_coding Danio_rerio
ENSG00000048991 R3HDM1 R3H domain containing 1 protein_coding Homo_sapiens

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