C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: R3H domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000048991 R3HDM1 9606 + 2:135531455-135725270 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264160 R3HDM1-001 135531513-135725270 protein_coding
  ENST00000409478 R3HDM1-004 135531501-135725266 protein_coding
  ENST00000409606 R3HDM1-006 135586437-135724343 protein_coding
  ENST00000410054 R3HDM1-005 135586250-135725268 protein_coding
  ENST00000425804 R3HDM1-015 135638899-135651940 protein_coding
  ENST00000429703 R3HDM1-007 135638733-135725265 protein_coding
  ENST00000436436 R3HDM1-011 135586352-135631743 protein_coding
  ENST00000438014 R3HDM1-010 135531517-135604820 protein_coding
  ENST00000441871 R3HDM1-014 135638641-135651774 protein_coding
  ENST00000443537 R3HDM1-013 135638618-135649331 processed_transcript
  ENST00000445855 R3HDM1-020 135675398-135722537 protein_coding
  ENST00000456040 R3HDM1-012 135604856-135636183 protein_coding
  ENST00000463230 R3HDM1-003 135531473-135606676 retained_intron
  ENST00000480793 R3HDM1-019 135621512-135631938 processed_transcript
  ENST00000483021 R3HDM1-008 135531455-135602670 processed_transcript
  ENST00000483065 R3HDM1-017 135721509-135722547 retained_intron
  ENST00000486532 R3HDM1-018 135633712-135639114 processed_transcript
  ENST00000487294 R3HDM1-016 135645233-135652021 retained_intron
  ENST00000488035 R3HDM1-009 135531527-135632001 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264160ENST00000409478ENST00000409606ENST00000410054ENST00000429703ENST00000436436ENST00000463230ENST00000486532
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264160 0.795±0.00 0.806±0.00 N/A 5.929±0.00 N/A 0.841±0.00 1.239±0.00 0.715±0.00 N/A N/A 2.343±0.00 0.780±0.00 0.245±0.00 2.293±0.00
ENST00000409478 2.883±0.00 1.369±0.00 N/A N/A 1.777±0.51 1.057±0.32 0.913±0.00 2.162±0.00 0.591±0.18 0.585±0.00 N/A 2.652±1.65 1.220±0.59 3.660±0.00
ENST00000409606 N/A N/A 1.138±0.00 N/A 0.876±0.00 N/A N/A 0.298±0.00 0.639±0.00 1.066±0.00 N/A 1.071±0.00 N/A N/A
ENST00000410054 N/A N/A N/A N/A N/A 0.591±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429703 N/A 1.140±0.00 N/A 6.596±1.13 1.152±0.00 N/A 1.525±0.00 N/A 0.646±0.00 N/A 3.062±0.14 3.144±1.88 1.646±0.00 9.047±4.21
ENST00000436436 N/A N/A N/A 27.557±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463230 N/A N/A N/A N/A 0.976±0.00 1.041±0.00 N/A N/A 1.248±0.00 1.215±0.00 N/A N/A N/A N/A
ENST00000486532 N/A N/A 1.358±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.483±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003S4 CIL_0003S4_0002 CGP 2:135136916-135725270
CIL_0006VO CIL_0006VO_0001 CGP 2:135531455-135785055

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063141 r3hdm1 R3H domain containing 1 protein_coding Danio_rerio
ENSMUSG00000056211 R3hdm1 R3H domain containing 1 protein_coding Mus_musculus

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