C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: R3H domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036288 R3hdm1-001 ENSMUSG00000056211 10090 + 1:128103324-128237736 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036288
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036288 5.599±3.01 5.765±1.63 3.413±1.58 9.635±4.33 4.759±1.61 4.100±2.52 3.722±0.68 2.457±0.94 1.204±0.42 2.605±0.91 11.739±1.34 5.269±1.10 2.232±0.35 6.734±1.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003S4 CIL_0003S4_0003 CGP 1:127954184-128237736
CIL_0006VO CIL_0006VO_0002 CGP 1:128103301-128279378

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264160 R3HDM1-001 protein_coding Homo_sapiens 0 2857
ENST00000409478 R3HDM1-004 protein_coding Homo_sapiens 0 2824
ENST00000409606 R3HDM1-006 protein_coding Homo_sapiens 0 2732
ENST00000410054 R3HDM1-005 protein_coding Homo_sapiens 0 2824
ENST00000425804 R3HDM1-015 protein_coding Homo_sapiens 0 316
ENST00000429703 R3HDM1-007 protein_coding Homo_sapiens 0 3853
ENST00000436436 R3HDM1-011 protein_coding Homo_sapiens 0 612
ENST00000438014 R3HDM1-010 protein_coding Homo_sapiens 0 316
ENST00000441871 R3HDM1-014 protein_coding Homo_sapiens 0 510
ENST00000443537 R3HDM1-013 processed_transcript Homo_sapiens 0 436
ENST00000445855 R3HDM1-020 protein_coding Homo_sapiens 0 564
ENST00000456040 R3HDM1-012 protein_coding Homo_sapiens 0 1101
ENST00000463230 R3HDM1-003 retained_intron Homo_sapiens 0 795
ENST00000480793 R3HDM1-019 processed_transcript Homo_sapiens 0 204
ENST00000483021 R3HDM1-008 processed_transcript Homo_sapiens 0 252
ENST00000483065 R3HDM1-017 retained_intron Homo_sapiens 0 219
ENST00000486532 R3HDM1-018 processed_transcript Homo_sapiens 0 754
ENST00000487294 R3HDM1-016 retained_intron Homo_sapiens 0 318
ENST00000488035 R3HDM1-009 processed_transcript Homo_sapiens 0 616

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