C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat containing 48
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108722 Lrrc48-201 ENSMUSG00000056598 10090 + 11:60353380-60394333 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000108722
Transcript ID Adrenal Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000108722 0.320±0.08 0.255±0.14 0.206±0.08 0.312±0.05 0.399±0.02 0.032±0.00 0.822±0.00 2.160±0.62 0.230±0.12 8.072±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058R CIL_00058R_0003 CGP 11:60226714-60394341
CIL_0000DY CIL_0000DY_0002 CGP 11:60353329-60418457

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313838 LRRC48-201 protein_coding Homo_sapiens 0 1482
ENST00000399182 LRRC48-004 protein_coding Homo_sapiens 0 1182
ENST00000399187 LRRC48-001 protein_coding Homo_sapiens 0 1487
ENST00000490517 LRRC48-003 retained_intron Homo_sapiens 0 407
ENST00000496293 LRRC48-013 nonsense_mediated_decay Homo_sapiens 0 191
ENST00000584166 LRRC48-008 protein_coding Homo_sapiens 0 1182

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