C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat containing 48
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108723 Lrrc48-001 ENSMUSG00000056598 10090 + 11:60353329-60394341 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108723
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108723 0.256±0.13 0.200±0.02 0.633±0.17 4.075±3.69 0.184±0.00 0.932±0.15 0.554±0.22 0.170±0.04 6.743±1.13 0.869±0.18 6.784±5.35 0.227±0.06 36.764±4.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058R CIL_00058R_0003 CGP 11:60226714-60394341
CIL_0000DY CIL_0000DY_0002 CGP 11:60353329-60418457

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313838 LRRC48-201 protein_coding Homo_sapiens 0 1476
ENST00000399182 LRRC48-004 protein_coding Homo_sapiens 0 1177
ENST00000399187 LRRC48-001 protein_coding Homo_sapiens 0 1482
ENST00000490517 LRRC48-003 retained_intron Homo_sapiens 0 401
ENST00000496293 LRRC48-013 nonsense_mediated_decay Homo_sapiens 0 189
ENST00000584166 LRRC48-008 protein_coding Homo_sapiens 0 1177

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