C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 5D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000055032 Kdm5d-001 ENSMUSG00000056673 10090 + Y:897790-946316 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055032
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055032 0.165±0.03 0.243±0.25 1.052±0.03 2.137±0.89 0.171±0.09 0.086±0.06 0.225±0.19 0.102±0.04 0.326±0.42 1.091±0.00 0.508±0.18 0.507±0.87 0.935±0.61 0.362±0.05

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317961 KDM5D-001 protein_coding Homo_sapiens 0 3526
ENST00000375379 KDM5C-006 protein_coding Homo_sapiens 0 2383
ENST00000375383 KDM5C-007 protein_coding Homo_sapiens 0 2383
ENST00000375401 KDM5C-005 protein_coding Homo_sapiens 0 2423
ENST00000382806 KDM5D-002 protein_coding Homo_sapiens 0 2992
ENST00000404049 KDM5C-009 protein_coding Homo_sapiens 0 2423
ENST00000415360 KDM5D-009 protein_coding Homo_sapiens 0 496
ENST00000440077 KDM5D-004 protein_coding Homo_sapiens 0 3171
ENST00000447300 KDM5D-003 protein_coding Homo_sapiens 0 544
ENST00000452825 KDM5C-201 protein_coding Homo_sapiens 0 2331
ENST00000469599 KDM5D-006 retained_intron Homo_sapiens 0 1033
ENST00000492117 KDM5D-005 retained_intron Homo_sapiens 0 1498
ENST00000541639 KDM5D-201 protein_coding Homo_sapiens 0 2361
ENST00000623344 KDM5D-202 protein_coding Homo_sapiens 0 3524
ENST00000623754 AC010889.1-201 protein_coding Homo_sapiens 0 2992
ENST00000624262 AC010889.2-201 protein_coding Homo_sapiens 0 2361

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