C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromodomain helicase DNA binding protein 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000057133 Chd6 10090 - 2:160946978-161109075 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039782 Chd6-003 160946978-161109022 protein_coding
  ENSMUST00000125179 Chd6-002 161035031-161109004 retained_intron
  ENSMUST00000130265 Chd6-004 161029839-161052578 protein_coding
  ENSMUST00000134178 Chd6-001 160983184-161109022 protein_coding
  ENSMUST00000137152 Chd6-011 160960064-160964796 processed_transcript
  ENSMUST00000137831 Chd6-009 161014092-161018249 processed_transcript
  ENSMUST00000138078 Chd6-005 161008034-161109075 retained_intron
  ENSMUST00000143081 Chd6-007 160959943-160961521 processed_transcript
  ENSMUST00000149866 Chd6-010 160991818-161008493 retained_intron
  ENSMUST00000155066 Chd6-008 161025886-161029548 processed_transcript
  ENSMUST00000155918 Chd6-006 160980482-160985046 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039782
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039782 2.423±1.23 1.638±0.59 3.735±0.15 7.502±2.12 2.000±0.81 1.367±0.42 1.411±0.35 1.648±0.59 0.757±0.22 2.534±0.87 1.057±0.27 3.789±2.96 2.811±1.47 0.826±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004E8 CIL_0004E8_0002 CGP 2:160906437-161109075
CIL_0004E5 CIL_0004E5_0002 CGP 2:160946978-162661147

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001221 IEA transcription cofactor binding
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005654 ISS nucleoplasm
GO:0005665 ISS DNA-directed RNA polymerase II, core complex
GO:0006200 IEA ATP catabolic process
GO:0006351 IEA transcription, DNA-templated
GO:0008026 IEA ATP-dependent helicase activity
GO:0008094 ISS DNA-dependent ATPase activity
GO:0016568 IEA chromatin modification
GO:0036091 ISS positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017244 CHD6 chromodomain helicase DNA binding protein 6 protein_coding Danio_rerio
ENSG00000124177 CHD6 chromodomain helicase DNA binding protein 6 protein_coding Homo_sapiens

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