C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromodomain helicase DNA binding protein 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000124177 CHD6 9606 - 20:41402101-41618494 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000309279 CHD6-201 41437262-41499317 protein_coding
  ENST00000373222 CHD6-006 41496809-41618375 protein_coding
  ENST00000373233 CHD6-001 41402101-41618494 protein_coding
  ENST00000440647 CHD6-008 41533156-41614773 protein_coding
  ENST00000440697 CHD6-002 41426142-41499317 protein_coding
  ENST00000470470 CHD6-005 41496809-41533285 processed_transcript
  ENST00000476641 CHD6-004 41473023-41484507 processed_transcript
  ENST00000480022 CHD6-003 41404523-41415065 processed_transcript
  ENST00000482596 CHD6-007 41514920-41618384 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000373233ENST00000482596
Transcript ID Adrenal Bladder Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000373233 0.570±0.00 3.258±0.00 3.016±1.15 1.377±0.00 1.191±0.00 2.238±1.26 0.628±0.13 1.120±0.00 1.970±1.44 1.805±0.30 4.316±0.00
ENST00000482596 N/A N/A N/A N/A N/A N/A N/A N/A 5.407±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004E8 CIL_0004E8_0001 CGP 20:41359966-41618494
CIL_0004E5 CIL_0004E5_0001 CGP 20:41402101-43189970

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001221 IPI transcription cofactor binding
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005654 IDA nucleoplasm
GO:0005665 IDA DNA-directed RNA polymerase II, core complex
GO:0006200 IEA ATP catabolic process
GO:0006351 IEA transcription, DNA-templated
GO:0008026 IEA ATP-dependent helicase activity
GO:0008094 IDA DNA-dependent ATPase activity
GO:0016568 IEA chromatin modification
GO:0016787 IEA hydrolase activity
GO:0016817 IEA hydrolase activity, acting on acid anhydrides
GO:0036091 IMP positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017244 CHD6 chromodomain helicase DNA binding protein 6 protein_coding Danio_rerio
ENSMUSG00000057133 Chd6 chromodomain helicase DNA binding protein 6 protein_coding Mus_musculus

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