C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004E5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000124177-ENSG00000196090 CGP 9606 20:41402101-43189970
GeneTranscriptPositionBiotype
ENSG00000196090 (PTPRT)
protein tyrosine phosphatase, receptor type, T 		ENST00000356100 (PTPRT-004) 42072752-43189733 protein_coding
ENST00000373184 (PTPRT-006) 42072752-43189733 protein_coding
ENST00000373187 (PTPRT-002) 42072752-43189733 protein_coding
ENST00000373190 (PTPRT-001) 42072752-43189842 protein_coding
ENST00000373193 (PTPRT-009) 42072774-43189917 protein_coding
ENST00000373198 (PTPRT-005) 42072752-43189969 protein_coding
ENST00000373201 (PTPRT-007) 42072752-43189970 protein_coding
ENST00000485499 (PTPRT-008) 42885842-42966419 processed_transcript
ENST00000612229 (PTPRT-201) 42072774-42472569 protein_coding
ENST00000617474 (PTPRT-010) 42080879-43189917 nonsense_mediated_decay
ENST00000618610 (PTPRT-202) 42080879-42472562 protein_coding
ENST00000620410 (PTPRT-203) 42677866-42791467 protein_coding
ENSG00000223190 (RN7SKP100)
RNA, 7SK small nuclear pseudogene 100 		ENST00000411258 (RN7SKP100-201) 43063326-43063609 misc_RNA
ENSG00000223651 (RP5-1121H13.1)
 ENST00000432563 (RP5-1121H13.1-001) 41997131-41999397 processed_pseudogene
ENSG00000225458 (RP5-1121H13.4)
 ENST00000431589 (RP5-1121H13.4-001) 41991140-42063969 antisense
ENSG00000227599 (RP4-753D4.2)
 ENST00000412519 (RP4-753D4.2-001) 42968743-42971492 antisense
ENSG00000228959 (RP5-1121H13.3)
 ENST00000412348 (RP5-1121H13.3-001) 42014034-42015478 lincRNA
ENSG00000229042 (RP1-232N11.2)
 ENST00000457704 (RP1-232N11.2-001) 42685483-42688562 antisense
ENST00000608258 (RP1-232N11.2-002) 42685404-42686217 antisense
ENSG00000229892 (RP4-730D4.1)
 ENST00000446195 (RP4-730D4.1-001) 42606694-42607559 processed_pseudogene
ENSG00000232493 (RPL12P11)
ribosomal protein L12 pseudogene 11 		ENST00000439970 (RPL12P11-001) 41547422-41547922 processed_pseudogene
ENSG00000235088 (RP4-620E11.4)
 ENST00000423903 (RP4-620E11.4-001) 41459354-41461944 processed_pseudogene
ENSG00000273951 (RP4-620E11.8)
 ENST00000620124 (RP4-620E11.8-001) 41485571-41486225 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0004E5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000057133-ENSMUSG00000053141 CGP 10090 2:160946978-162661147
GeneTranscriptPositionBiotype
ENSMUSG00000053141 (Ptprt)
protein tyrosine phosphatase, receptor type, T 		ENSMUST00000109441 (Ptprt-004) 161527509-162661147 protein_coding
ENSMUST00000109442 (Ptprt-002) 161526357-162661094 protein_coding
ENSMUST00000109443 (Ptprt-003) 161521990-162661147 protein_coding
ENSMUST00000109445 (Ptprt-001) 161521990-162661147 protein_coding
ENSMUST00000129015 (Ptprt-005) 162012015-162135451 processed_transcript
ENSMUST00000153770 (Ptprt-006) 161698009-161800155 processed_transcript
ENSMUSG00000057133 (Chd6)
chromodomain helicase DNA binding protein 6 		ENSMUST00000039782 (Chd6-003) 160946978-161109022 protein_coding
ENSMUST00000125179 (Chd6-002) 161035031-161109004 retained_intron
ENSMUST00000130265 (Chd6-004) 161029839-161052578 protein_coding
ENSMUST00000134178 (Chd6-001) 160983184-161109022 protein_coding
ENSMUST00000137152 (Chd6-011) 160960064-160964796 processed_transcript
ENSMUST00000137831 (Chd6-009) 161014092-161018249 processed_transcript
ENSMUST00000138078 (Chd6-005) 161008034-161109075 retained_intron
ENSMUST00000143081 (Chd6-007) 160959943-160961521 processed_transcript
ENSMUST00000149866 (Chd6-010) 160991818-161008493 retained_intron
ENSMUST00000155066 (Chd6-008) 161025886-161029548 processed_transcript
ENSMUST00000155918 (Chd6-006) 160980482-160985046 retained_intron
ENSMUSG00000067745 (Gm14243)
predicted gene 14243 		ENSMUST00000131401 (Gm14243-001) 161179064-161216577 lincRNA
ENSMUSG00000081099 (Gm5270)
predicted gene 5270 		ENSMUST00000121506 (Gm5270-001) 161254456-161255457 processed_pseudogene
ENSMUSG00000081151 (Gm11448)
predicted gene 11448 		ENSMUST00000120427 (Gm11448-001) 161287220-161287669 processed_pseudogene
ENSMUSG00000083374 (Gm11449)
predicted gene 11449 		ENSMUST00000119175 (Gm11449-001) 161482563-161483038 processed_pseudogene
ENSMUSG00000084919 (Ptprtos)
protein tyrosine phosphatase, receptor type T, opposite strand 		ENSMUST00000151688 (Ptprtos-001) 162390813-162393945 antisense
ENSMUSG00000100943 (RP23-466K24.2)
predicted gene 29229 		ENSMUST00000188874 (RP23-466K24.2-001) 161513690-161514012 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004E5_0001ENSG00000196090ENST00000356100ENST00000373184ENST00000373187ENST00000373190ENST00000373193ENST00000373198ENST00000373201ENST00000485499ENST00000612229ENST00000617474ENST00000618610ENST00000620410ENSG00000223190ENST00000411258ENSG00000223651ENST00000432563ENSG00000225458ENST00000431589ENSG00000227599ENST00000412519ENSG00000228959ENST00000412348ENSG00000229042ENST00000457704ENST00000608258ENSG00000229892ENST00000446195ENSG00000232493ENST00000439970ENSG00000235088ENST00000423903ENSG00000273951ENST00000620124CIL_0004E5_0002ENSMUSG00000053141ENSMUST00000109441ENSMUST00000109442ENSMUST00000109443ENSMUST00000109445ENSMUST00000129015ENSMUST00000153770ENSMUSG00000057133ENSMUST00000039782ENSMUST00000125179ENSMUST00000130265ENSMUST00000134178ENSMUST00000137152ENSMUST00000137831ENSMUST00000138078ENSMUST00000143081ENSMUST00000149866ENSMUST00000155066ENSMUST00000155918ENSMUSG00000067745ENSMUST00000131401ENSMUSG00000081099ENSMUST00000121506ENSMUSG00000081151ENSMUST00000120427ENSMUSG00000083374ENSMUST00000119175ENSMUSG00000084919ENSMUST00000151688ENSMUSG00000100943ENSMUST00000188874
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004E5_0001ENSG00000196090ENST00000356100ENST00000373184ENST00000373187ENST00000373190ENST00000373201ENST00000612229ENST00000617474ENST00000618610ENST00000620410ENSG00000223190ENST00000411258ENSG00000223651ENST00000432563ENSG00000225458ENST00000431589ENSG00000227599ENST00000412519ENSG00000228959ENST00000412348ENSG00000229042ENST00000457704ENST00000608258ENSG00000229892ENST00000446195ENSG00000232493ENST00000439970ENSG00000235088ENST00000423903ENSG00000273951ENST00000620124CIL_0004E5_0002ENSMUSG00000053141ENSMUST00000109441ENSMUST00000109442ENSMUST00000109443ENSMUST00000109445ENSMUST00000129015ENSMUSG00000057133ENSMUST00000039782ENSMUSG00000067745ENSMUST00000131401ENSMUSG00000081099ENSMUST00000121506ENSMUSG00000081151ENSMUST00000120427ENSMUSG00000083374ENSMUST00000119175ENSMUSG00000084919ENSMUST00000151688ENSMUSG00000100943ENSMUST00000188874
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000196090 ENST00000356100 N/A N/A N/A 2.416±0.00 N/A N/A N/A N/A N/A N/A N/A 0.005±0.00 N/A 0.524±0.00
ENST00000373184 N/A 0.037±0.00 N/A 0.965±0.00 N/A 0.086±0.00 N/A N/A N/A 0.570±0.00 N/A 0.376±0.37 0.266±0.09 N/A
ENST00000373187 N/A N/A N/A N/A N/A N/A 0.067±0.00 N/A N/A N/A N/A 0.003±0.00 0.143±0.00 N/A
ENST00000373190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.178±0.00 N/A
ENST00000373193 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000373198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000373201 N/A 0.038±0.00 N/A N/A 0.230±0.00 N/A N/A N/A N/A N/A N/A 0.005±0.00 N/A N/A
ENST00000485499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612229 0.005±0.00 0.070±0.00 N/A 6.667±3.85 0.203±0.06 0.039±0.00 0.011±0.00 0.103±0.04 0.097±0.01 0.441±0.12 0.009±0.01 0.140±0.19 0.217±0.00 0.399±0.00
ENST00000617474 N/A N/A 0.077±0.00 N/A N/A N/A 0.040±0.00 N/A N/A N/A N/A N/A 0.398±0.00 N/A
ENST00000618610 0.038±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.264±0.00 N/A
ENST00000620410 N/A N/A N/A N/A 0.720±0.00 0.325±0.00 N/A 0.520±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000223190 ENST00000411258 N/A N/A N/A N/A N/A 6.379±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223651 ENST00000432563 N/A N/A N/A 0.059±0.00 N/A N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A 0.084±0.00
ENSG00000225458 ENST00000431589 N/A N/A N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000227599 ENST00000412519 N/A N/A N/A 0.023±0.00 N/A N/A 0.042±0.00 0.029±0.00 N/A 0.057±0.00 N/A N/A N/A 0.290±0.00
ENSG00000228959 ENST00000412348 N/A 0.033±0.00 N/A N/A N/A 0.062±0.00 0.031±0.00 0.067±0.00 N/A N/A N/A N/A N/A 0.149±0.00
ENSG00000229042 ENST00000457704 N/A N/A N/A 0.007±0.00 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A 0.023±0.00 0.071±0.00
ENST00000608258 N/A N/A N/A 0.360±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.067±0.00 N/A
ENSG00000229892 ENST00000446195 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.152±0.00 N/A N/A N/A N/A
ENSG00000232493 ENST00000439970 0.087±0.00 N/A 0.088±0.00 0.158±0.00 0.217±0.00 N/A 0.054±0.00 0.030±0.00 N/A 0.142±0.00 N/A 0.050±0.00 N/A 0.050±0.00
ENSG00000235088 ENST00000423903 N/A N/A N/A 0.922±0.00 N/A 3.720±0.00 N/A N/A N/A N/A N/A 0.510±0.32 N/A N/A
ENSG00000273951 ENST00000620124 0.197±0.00 0.114±0.00 1.278±0.00 0.221±0.02 0.795±0.68 0.011±0.00 0.012±0.00 1.720±1.66 0.493±0.45 0.253±0.00 N/A 0.278±0.18 0.125±0.04 0.097±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000053141 ENSMUST00000109441 0.003±0.00 0.039±0.00 N/A N/A 0.042±0.03 0.196±0.09 0.014±0.01 0.018±0.01 0.036±0.02 0.052±0.02 N/A 0.335±0.11 N/A 0.147±0.03
ENSMUST00000109442 N/A 0.035±0.01 N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A 0.551±0.05 0.002±0.00 0.033±0.00
ENSMUST00000109443 0.005±0.00 0.012±0.00 N/A 2.912±1.34 0.018±0.01 0.071±0.02 0.004±0.00 0.005±0.00 0.014±0.01 0.028±0.01 0.004±0.00 0.160±0.06 0.004±0.00 N/A
ENSMUST00000109445 0.005±0.00 0.012±0.00 0.039±0.02 1.349±1.11 0.021±0.01 0.143±0.07 0.004±0.00 0.005±0.00 0.024±0.01 0.038±0.01 0.024±0.01 0.205±0.10 0.004±0.00 0.199±0.08
ENSMUST00000129015 0.201±0.00 N/A N/A N/A 0.502±0.38 3.634±1.32 N/A N/A 0.392±0.05 1.509±0.12 0.391±0.00 3.692±0.77 0.144±0.00 N/A
ENSMUST00000153770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000057133 ENSMUST00000039782 2.423±1.23 1.638±0.59 3.735±0.15 7.502±2.12 2.000±0.81 1.367±0.42 1.411±0.35 1.648±0.59 0.757±0.22 2.534±0.87 1.057±0.27 3.789±2.96 2.811±1.47 0.826±0.09
ENSMUST00000125179 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134178 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000067745 ENSMUST00000131401 0.030±0.01 N/A N/A N/A N/A 0.039±0.00 N/A N/A N/A N/A N/A 0.031±0.00 N/A 0.005±0.00
ENSMUSG00000081099 ENSMUST00000121506 0.052±0.02 0.052±0.00 N/A 0.062±0.02 0.220±0.20 N/A 0.106±0.02 0.052±0.02 0.066±0.04 N/A N/A 0.148±0.02 0.108±0.00 0.158±0.04
ENSMUSG00000081151 ENSMUST00000120427 N/A N/A 0.027±0.00 0.119±0.11 N/A N/A N/A N/A 0.015±0.00 N/A N/A 0.383±0.24 0.054±0.04 0.714±0.17
ENSMUSG00000083374 ENSMUST00000119175 0.134±0.00 N/A 0.025±0.00 0.399±0.32 N/A N/A 0.353±0.04 N/A 0.673±1.10 N/A 0.227±0.05 0.321±0.11 0.031±0.02 0.159±0.05
ENSMUSG00000084919 ENSMUST00000151688 N/A N/A N/A 0.074±0.00 N/A N/A N/A N/A N/A N/A N/A 0.333±0.00 0.039±0.03 N/A
ENSMUSG00000100943 ENSMUST00000188874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.196±0.00 N/A N/A

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