C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromodomain helicase DNA binding protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039782 Chd6-003 ENSMUSG00000057133 10090 - 2:160946978-161109022 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039782
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039782 2.423±1.23 1.638±0.59 3.735±0.15 7.502±2.12 2.000±0.81 1.367±0.42 1.411±0.35 1.648±0.59 0.757±0.22 2.534±0.87 1.057±0.27 3.789±2.96 2.811±1.47 0.826±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004E8 CIL_0004E8_0002 CGP 2:160906437-161109075
CIL_0004E5 CIL_0004E5_0002 CGP 2:160946978-162661147

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001221 IEA transcription cofactor binding
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005524 IEA ATP binding
GO:0005654 ISS nucleoplasm
GO:0005665 ISS DNA-directed RNA polymerase II, core complex
GO:0006200 IEA ATP catabolic process
GO:0006351 IEA transcription, DNA-templated
GO:0008026 IEA ATP-dependent helicase activity
GO:0008094 ISS DNA-dependent ATPase activity
GO:0016568 IEA chromatin modification
GO:0036091 ISS positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309279 CHD6-201 protein_coding Homo_sapiens 0 1190
ENST00000373222 CHD6-006 protein_coding Homo_sapiens 0 1153
ENST00000373233 CHD6-001 protein_coding Homo_sapiens 0 9786
ENST00000440647 CHD6-008 protein_coding Homo_sapiens 0 562
ENST00000440697 CHD6-002 protein_coding Homo_sapiens 0 1190
ENST00000470470 CHD6-005 processed_transcript Homo_sapiens 0 1007
ENST00000476641 CHD6-004 processed_transcript Homo_sapiens 0 778
ENST00000480022 CHD6-003 processed_transcript Homo_sapiens 0 1347
ENST00000482596 CHD6-007 processed_transcript Homo_sapiens 0 630

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