C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: carbohydrate (chondroitin 6/keratan) sulfotransferase 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000057337 Chst3 10090 - 10:60181532-60219260 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000068690 Chst3-002 60181534-60188707 protein_coding
  ENSMUST00000135158 Chst3-201 60181532-60219260 protein_coding
  ENSMUST00000167915 Chst3-001 60185605-60194239 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068690ENSMUST00000135158ENSMUST00000167915
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068690 0.223±0.00 0.139±0.02 0.057±0.02 0.191±0.00 2.678±0.95 0.319±0.15 0.205±0.04 0.274±0.07 0.122±0.06 2.741±1.28 0.193±0.05 0.828±0.46 0.125±0.10 0.090±0.04
ENSMUST00000135158 0.458±0.08 0.364±0.10 0.246±0.01 0.516±0.30 4.735±2.53 0.438±0.19 0.326±0.14 1.475±0.17 0.148±0.10 3.586±1.38 0.374±0.39 1.550±0.69 0.054±0.02 0.109±0.07
ENSMUST00000167915 N/A 0.342±0.11 N/A 0.270±0.00 8.608±0.55 0.473±0.11 N/A 0.693±0.00 0.024±0.00 4.506±0.78 0.103±0.00 1.930±0.46 0.223±0.00 0.196±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VS CIL_0007VS_0002 VISTA 10:59667734-60271225

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0005975 IEA carbohydrate metabolic process
GO:0006790 IEA sulfur compound metabolic process
GO:0008459 IDA chondroitin 6-sulfotransferase activity
GO:0016021 IEA integral component of membrane
GO:0030206 IMP chondroitin sulfate biosynthetic process
GO:0043029 IMP T cell homeostasis
GO:0050698 IMP proteoglycan sulfotransferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061070 chst3a carbohydrate (chondroitin 6) sulfotransferase 3a protein_coding Danio_rerio
ENSDARG00000077844 chst3b carbohydrate (chondroitin 6) sulfotransferase 3b protein_coding Danio_rerio
ENSG00000122863 CHST3 carbohydrate (chondroitin 6) sulfotransferase 3 protein_coding Homo_sapiens

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