C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: palladin, cytoskeletal associated protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121493 Palld-004 ENSMUSG00000058056 10090 - 8:61513252-61760089 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartLiverOvaryTestisENSMUST00000121493
Transcript ID Adipose Brain Colon Heart Liver Ovary Testis
ENSMUST00000121493 30.663±2.91 2.127±0.87 4.281±0.79 5.761±0.77 0.248±0.00 4.618±0.81 0.980±0.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006KH CIL_0006KH_0002 CGP 8:61487734-61902690

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0005884 ISS actin filament
GO:0030054 IEA cell junction
GO:0042995 IEA cell projection

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261509 PALLD-001 protein_coding Homo_sapiens 0 1587
ENST00000393726 PALLD-012 protein_coding Homo_sapiens 0 678
ENST00000503290 PALLD-013 protein_coding Homo_sapiens 0 603
ENST00000503457 PALLD-010 protein_coding Homo_sapiens 0 532
ENST00000505667 PALLD-002 protein_coding Homo_sapiens 0 1347
ENST00000507325 PALLD-017 retained_intron Homo_sapiens 0 311
ENST00000507699 PALLD-006 retained_intron Homo_sapiens 0 1624
ENST00000507735 PALLD-005 protein_coding Homo_sapiens 0 2329
ENST00000508898 PALLD-003 protein_coding Homo_sapiens 0 612
ENST00000511682 PALLD-015 retained_intron Homo_sapiens 0 346
ENST00000512127 PALLD-004 protein_coding Homo_sapiens 0 1860
ENST00000513187 PALLD-014 retained_intron Homo_sapiens 0 527
ENST00000513245 PALLD-009 protein_coding Homo_sapiens 0 455

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