C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: palladin, cytoskeletal associated protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121200 Palld-003 ENSMUSG00000058056 10090 - 8:61513248-61591142 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryTestisENSMUST00000121200
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Testis
ENSMUST00000121200 16.471±0.00 13.894±4.63 1.078±0.00 15.375±4.53 29.567±2.60 12.964±5.66 8.319±3.17 15.116±7.07 35.217±12.48 0.839±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006KH CIL_0006KH_0002 CGP 8:61487734-61902690

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0005884 ISS actin filament
GO:0030054 IEA cell junction
GO:0042995 IEA cell projection

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261509 PALLD-001 protein_coding Homo_sapiens 0 1587
ENST00000393726 PALLD-012 protein_coding Homo_sapiens 0 678
ENST00000503290 PALLD-013 protein_coding Homo_sapiens 0 603
ENST00000505667 PALLD-002 protein_coding Homo_sapiens 0 1347
ENST00000507325 PALLD-017 retained_intron Homo_sapiens 0 311
ENST00000507699 PALLD-006 retained_intron Homo_sapiens 0 1628
ENST00000507735 PALLD-005 protein_coding Homo_sapiens 0 2333
ENST00000511682 PALLD-015 retained_intron Homo_sapiens 0 346
ENST00000512127 PALLD-004 protein_coding Homo_sapiens 0 1860
ENST00000513187 PALLD-014 retained_intron Homo_sapiens 0 527

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