C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: putative homeodomain transcription factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000058388 Phtf1 10090 + 3:103968110-104024598 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000055425 Phtf1-003 103968368-104007490 protein_coding
  ENSMUST00000063717 Phtf1-001 103968258-104007488 protein_coding
  ENSMUST00000090685 Phtf1-007 103968446-104007490 protein_coding
  ENSMUST00000117150 Phtf1-002 103968110-104007488 protein_coding
  ENSMUST00000123611 Phtf1-010 103968374-103991127 protein_coding
  ENSMUST00000130385 Phtf1-006 103996420-103997565 retained_intron
  ENSMUST00000145727 Phtf1-004 103968366-104024598 nonsense_mediated_decay
  ENSMUST00000150090 Phtf1-005 103968372-104007488 retained_intron
  ENSMUST00000150849 Phtf1-008 103968925-103997521 nonsense_mediated_decay
  ENSMUST00000156262 Phtf1-009 103968588-103987561 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055425ENSMUST00000063717ENSMUST00000090685ENSMUST00000117150ENSMUST00000123611ENSMUST00000145727ENSMUST00000150090
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055425 N/A 2.215±0.00 N/A 12.914±0.00 3.031±0.00 N/A 1.009±0.00 0.937±0.00 N/A N/A 0.665±0.00 7.538±4.65 13.051±6.60 21.596±0.00
ENSMUST00000063717 3.491±1.81 3.659±0.74 3.106±0.00 7.780±0.00 2.779±0.91 2.167±0.62 0.945±0.30 2.128±0.84 1.125±0.79 4.786±1.30 1.270±0.25 4.667±0.79 3.056±0.00 9.555±1.14
ENSMUST00000090685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.630±0.00 N/A N/A 8.621±0.00
ENSMUST00000117150 0.883±0.00 N/A 3.695±0.00 N/A N/A N/A N/A 1.716±0.18 1.702±0.97 N/A 1.033±0.00 11.212±0.00 6.114±4.68 9.510±0.71
ENSMUST00000123611 N/A 9.647±2.43 N/A 30.745±0.00 5.011±0.00 2.679±0.31 N/A N/A N/A N/A N/A 10.070±8.51 21.275±12.28 101.530±0.00
ENSMUST00000145727 N/A N/A N/A N/A N/A 0.941±0.00 0.493±0.06 N/A 0.284±0.12 1.845±0.07 N/A 1.523±0.00 N/A N/A
ENSMUST00000150090 0.626±0.00 N/A N/A N/A 0.890±0.08 N/A 0.584±0.00 N/A N/A 1.568±0.00 N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005801 IEA cis-Golgi network
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057708 PHTF1 putative homeodomain transcription factor 1 protein_coding Danio_rerio
ENSG00000116793 PHTF1 putative homeodomain transcription factor 1 protein_coding Homo_sapiens

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