C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XIII, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000058806 Col13a1 10090 - 10:61838236-61979108 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000051826 Col13a1-002 61848732-61978121 retained_intron
  ENSMUST00000105451 Col13a1-003 61838236-61878392 processed_transcript
  ENSMUST00000105452 Col13a1-005 61838236-61979073 protein_coding
  ENSMUST00000105453 Col13a1-004 61838236-61979073 protein_coding
  ENSMUST00000105454 Col13a1-001 61838236-61979108 protein_coding
  ENSMUST00000145469 Col13a1-006 61838236-61866413 protein_coding
  ENSMUST00000153120 Col13a1-007 61848861-61851525 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051826ENSMUST00000105451ENSMUST00000105452ENSMUST00000105453ENSMUST00000105454ENSMUST00000145469
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051826 N/A N/A 0.101±0.00 0.064±0.00 N/A N/A N/A 0.115±0.00 N/A N/A 0.142±0.00 0.554±0.00 0.050±0.02
ENSMUST00000105451 N/A N/A N/A N/A N/A N/A 0.075±0.01 N/A N/A 0.085±0.00 N/A 0.874±0.18 0.122±0.00
ENSMUST00000105452 N/A 0.029±0.00 N/A N/A N/A 0.085±0.00 N/A 0.165±0.00 N/A 0.047±0.00 N/A 0.354±0.00 N/A
ENSMUST00000105453 0.235±0.13 N/A 0.100±0.00 0.419±0.16 0.319±0.10 0.240±0.02 0.167±0.00 0.336±0.22 5.758±2.37 0.201±0.00 0.566±0.28 0.715±0.18 0.155±0.06
ENSMUST00000105454 0.070±0.00 0.026±0.00 N/A 0.123±0.00 0.207±0.00 0.082±0.00 0.080±0.00 0.180±0.04 N/A 0.334±0.10 0.292±0.03 0.430±0.14 N/A
ENSMUST00000145469 N/A N/A 0.099±0.00 0.620±0.00 N/A N/A N/A N/A N/A 0.115±0.00 N/A 0.496±0.00 0.062±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TI CIL_0007TI_0002 VISTA 10:61828052-62430842

Gene Ontology
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091398 COL13A1 collagen, type XIII, alpha 1 protein_coding Danio_rerio
ENSG00000197467 COL13A1 collagen, type XIII, alpha 1 protein_coding Homo_sapiens

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