C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XIII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105452 Col13a1-005 ENSMUSG00000058806 10090 - 10:61838236-61979073 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderHeartLiverMusclePlacentaENSMUST00000105452
Transcript ID Bladder Heart Liver Muscle Placenta
ENSMUST00000105452 0.029±0.00 0.085±0.00 0.165±0.00 0.047±0.00 0.354±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TI CIL_0007TI_0002 VISTA 10:61828052-62430842

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354547 COL13A1-002 protein_coding Homo_sapiens 0 1980
ENST00000357811 COL13A1-004 protein_coding Homo_sapiens 0 1201
ENST00000398969 COL13A1-201 protein_coding Homo_sapiens 0 1568
ENST00000398975 COL13A1-006 protein_coding Homo_sapiens 0 1062
ENST00000398978 COL13A1-001 protein_coding Homo_sapiens 0 2944
ENST00000456019 COL13A1-008 protein_coding Homo_sapiens 0 632
ENST00000478219 COL13A1-009 retained_intron Homo_sapiens 0 388
ENST00000479733 COL13A1-003 nonsense_mediated_decay Homo_sapiens 0 1829
ENST00000517713 COL13A1-013 protein_coding Homo_sapiens 0 974
ENST00000518052 COL13A1-012 processed_transcript Homo_sapiens 0 241
ENST00000520133 COL13A1-015 protein_coding Homo_sapiens 0 974
ENST00000520267 COL13A1-011 protein_coding Homo_sapiens 0 1568
ENST00000522165 COL13A1-014 protein_coding Homo_sapiens 0 1282

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