C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XIII, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000197467 COL13A1 9606 + 10:69801931-69964275 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000354547 COL13A1-002 69801932-69959148 protein_coding
  ENST00000357811 COL13A1-004 69801932-69959148 protein_coding
  ENST00000398969 COL13A1-201 69802118-69958733 protein_coding
  ENST00000398975 COL13A1-006 69927088-69959015 protein_coding
  ENST00000398978 COL13A1-001 69801932-69959148 protein_coding
  ENST00000456019 COL13A1-008 69930453-69958927 protein_coding
  ENST00000478219 COL13A1-009 69954901-69959142 retained_intron
  ENST00000479733 COL13A1-003 69801931-69958900 nonsense_mediated_decay
  ENST00000484990 COL13A1-007 69877296-69879427 processed_transcript
  ENST00000517713 COL13A1-013 69802424-69958701 protein_coding
  ENST00000518052 COL13A1-012 69944125-69964275 processed_transcript
  ENST00000520133 COL13A1-015 69802424-69958701 protein_coding
  ENST00000520267 COL13A1-011 69802118-69958733 protein_coding
  ENST00000522165 COL13A1-014 69802424-69958701 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354547ENST00000357811ENST00000398969ENST00000398975ENST00000456019ENST00000478219ENST00000479733ENST00000484990ENST00000517713ENST00000518052ENST00000520133ENST00000520267ENST00000522165
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354547 N/A N/A 0.031±0.00 N/A N/A N/A N/A N/A N/A N/A 0.115±0.00 0.279±0.00 N/A
ENST00000357811 N/A N/A N/A 0.076±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000398969 N/A N/A N/A N/A 0.285±0.00 N/A N/A N/A N/A 0.139±0.00 0.267±0.00 0.262±0.16 0.194±0.00
ENST00000398975 0.409±0.00 N/A N/A N/A 0.350±0.00 N/A 0.195±0.00 N/A N/A N/A 0.674±0.00 0.172±0.00 N/A
ENST00000456019 0.419±0.00 N/A N/A 0.306±0.00 0.652±0.00 N/A N/A N/A N/A N/A N/A N/A 0.150±0.00
ENST00000478219 0.116±0.00 N/A 0.057±0.02 0.063±0.00 N/A N/A N/A N/A 0.484±0.00 N/A 0.098±0.00 N/A 0.097±0.02
ENST00000479733 N/A N/A N/A N/A N/A 0.197±0.00 0.214±0.00 N/A N/A N/A 0.074±0.00 0.072±0.00 N/A
ENST00000484990 N/A N/A N/A 1.382±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517713 0.394±0.00 N/A 0.406±0.00 0.385±0.00 0.703±0.00 N/A N/A N/A 6.658±0.00 N/A N/A 0.328±0.00 0.219±0.00
ENST00000518052 N/A N/A N/A N/A N/A N/A N/A 0.285±0.00 N/A N/A N/A N/A N/A
ENST00000520133 N/A 0.046±0.00 N/A N/A N/A N/A N/A 0.020±0.00 0.443±0.00 N/A 0.450±0.26 0.517±0.26 N/A
ENST00000520267 N/A N/A N/A N/A N/A N/A 0.451±0.00 N/A N/A N/A N/A 0.238±0.00 N/A
ENST00000522165 N/A N/A N/A 0.233±0.00 N/A 0.156±0.00 N/A N/A N/A N/A 0.543±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TI CIL_0007TI_0001 VISTA 10:69276019-69878973

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001763 ISS morphogenesis of a branching structure
GO:0001958 ISS endochondral ossification
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005600 TAS collagen type XIII trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0005886 TAS plasma membrane
GO:0005911 IEA cell-cell junction
GO:0007160 IPI cell-matrix adhesion
GO:0008201 IDA heparin binding
GO:0016337 IEP single organismal cell-cell adhesion
GO:0022617 TAS extracellular matrix disassembly
GO:0030154 IEA cell differentiation
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091398 COL13A1 collagen, type XIII, alpha 1 protein_coding Danio_rerio
ENSMUSG00000058806 Col13a1 collagen, type XIII, alpha 1 protein_coding Mus_musculus

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