C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Gene Info | |||||
|---|---|---|---|---|---|
| Description: | opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan) | ||||
| Gene Accession | Gene Name | Tax ID | Strand | Position | Gene Biotype |
ENSMUSG00000058831  |
Opn1sw | 10090 | - |
6:29376671-29388468  |
protein_coding |
| Transcript Accession | Transcript Name | Position | Transcript Biotype | ||
| ENSMUST00000080428 |
Opn1sw-001 | 29376671-29380513 | protein_coding | ||
| ENSMUST00000131928 |
Opn1sw-003 | 29378931-29380413 | processed_transcript | ||
| ENSMUST00000147483 |
Opn1sw-002 | 29377384-29380431 | protein_coding | ||
| ENSMUST00000173653 |
Opn1sw-004 | 29379373-29388468 | protein_coding | ||
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0004FD | CIL_0004FD_0002 | CGP | 6:29319140-29377110 |
| CIL_0005UE | CIL_0005UE_0003 | CGP | 6:29348069-29388468 |
| CIL_0001YA | CIL_0001YA_0002 | CGP | 6:29376671-29426994 |
Gene Ontology |
||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0001750 | IDA | photoreceptor outer segment |
| GO:0004930 | IEA | G-protein coupled receptor activity |
| GO:0007186 | IEA | G-protein coupled receptor signaling pathway |
| GO:0007601 | IEA | visual perception |
| GO:0007602 | IEA | phototransduction |
| GO:0009881 | IEA | photoreceptor activity |
| GO:0016021 | IEA | integral component of membrane |
| GO:0018298 | IEA | protein-chromophore linkage |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Description | Biotype | Species | |
|
ENSDARG00000045677
|
opn1sw1 | opsin 1 (cone pigments), short-wave-sensitive 1 | protein_coding | Danio_rerio | |
|
ENSG00000128617
|
OPN1SW | opsin 1 (cone pigments), short-wave-sensitive | protein_coding | Homo_sapiens | |
